AMCG00008165 (psma7,LOC106571922)


Basic Information

Item Value
gene id AMCG00008165
gene name psma7,LOC106571922
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44749090 ~ 44752458 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008165
ATGAGTTACGACCGGGCGATCACCGTCTTTTCCCCGGACGGGCATCTGTTTCAGGTGGAATACGCGCAAGAAGCCGTAAAGAAGGGATCCACAGCAGTCGGAGTAAGAGGCAACAACATCGTTGTGCTGGGAGTGGAGAAGAAGTCAGTAGCCAAGCTGCAAGACGACCGGACTGTGCGTAAAATCTGCGCCCTGGATGACAATGTTTTCATGGCTTTTGCCGGGCTCACAGCGGATGCCAGGATTGTTATAAACAGAGCCCGGGTCGAGTGTCAGAGCCACAGACTGACTGTGGAGGACCCCGTCACAGTCGAGTACATCACACGCTACATTTCCAGCCTCAAACAGCGTTACACTCAGAGCAACGGGCGCAGGCCTTTTGGGATCTCCTCCCTCATCGTGGGTTTCGACTTCGATGGATCACCAAGACTGTACCAGACTGACCCATCAGGAACGTATCACGCTTGGAAGGCAAACGCCATCGGGAGATCTGCGAAGACCGTCAGAGAGTTTCTGGAAAAGAATTACAAAGAGGAAGACATGGACACGGACAAAGAAACCATAAAGCTTGCAATTAGAGCTCTTCTTGAGgttGTCCAATCTGGAGGCAAGAACATTGAGCTGGCAGTCATGAGGCGTGATGAGCCACTAAAGattttaaatcaaGAGGAAATTGAGAAGTACGTCTcagaaattgaaaaagaaaaggaagaaaccgaaaagcaaaagaagaaaaccACAACATAGATCACAccgttttcccttttatttggTGGGAAGCCATGAAAACTACAAAATTTGCAGTTTTTAGAAATACAAGTGCTTTACTCTTGCAATAAAAGTCAGTCTAAACATTTA

Function

symbol description
psma7 Enables identical protein binding activity. Predicted to be involved in proteasomal protein catabolic process. Located in extracellular exosome and nucleus. Part of proteasome core complex, alpha-subunit complex.

NR:

description
PREDICTED: proteasome subunit alpha type-7-like

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02731 PSMA7; 20S proteasome subunit alpha 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008165 True 858 mRNA 0.47 7 44749090 44752458

Neighbor

gene id symbol gene type direction distance location
AMCG00008164 NA coding downstream 8175 44721739 ~ 44740915 (-)
AMCG00008158 NA coding downstream 666242 44073663 ~ 44082848 (-)
AMCG00008159 col9a3 coding downstream 677105 44044933 ~ 44071985 (-)
AMCG00008151 LOC106519038,LOC106571933,LOC103357347,LOC104951675 coding downstream 776790 43962078 ~ 43972300 (-)
AMCG00008152 ncoa3,LOC107090280 coding downstream 827062 43897216 ~ 43922028 (-)
AMCG00008163 NA coding upstream 24195 44776653 ~ 44778533 (-)
AMCG00008166 NA coding upstream 26278 44778736 ~ 44786186 (-)
AMCG00008174 NA coding upstream 43468 44795926 ~ 44814080 (-)
AMCG00008173 NA coding upstream 99831 44852289 ~ 44872215 (-)
AMCG00008172 NA coding upstream 126552 44879010 ~ 44883212 (-)
G28976 NA non-coding downstream 60915 44682437 ~ 44688175 (-)
G28978 NA non-coding downstream 67321 44681425 ~ 44681769 (-)
G28977 cdh4,LOC101161393 non-coding downstream 69048 44679816 ~ 44680042 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding downstream 82513 44666343 ~ 44666577 (-)
G28973 NA non-coding downstream 261671 44487210 ~ 44487419 (-)
G29081 NA non-coding upstream 281987 45034445 ~ 45036413 (-)
G29170 NA non-coding upstream 601349 45353807 ~ 45354086 (-)
G29182 NA non-coding upstream 667132 45419590 ~ 45420462 (-)
G29192 NA non-coding upstream 709321 45461779 ~ 45462530 (-)
G29206 NA non-coding upstream 737549 45490007 ~ 45490890 (-)
G28970 NA other downstream 330894 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 1165677 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 1628926 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 1984436 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 2348016 42359900 ~ 42401074 (-)
AMCG00008192 NA other upstream 397043 45149501 ~ 45228504 (-)
G29301 NA other upstream 1298237 46050695 ~ 46054346 (-)
G29361 NA other upstream 1728488 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 2827681 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 2914184 47666642 ~ 47918462 (-)

Expression


Co-expression Network