AMCG00008168


Basic Information

Item Value
gene id AMCG00008168
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44766145 ~ 44770112 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008168
AGACGCGGCATGCTTTCGTTAGGTAagtaactttaaaagaaatatgcATAGATTGAATTTAAACGTTTTACATAAACGTAAACTAAACCGAGAcgcaaataaaataataatattgtacagCTGATCAAATGAGAAGCACTACTGAAAATATGATCTAGCTGCATATTTCGTATGTTGTTAAACACAGTAACCTTCGGTAGCAATGGTCCCAAACCTCGAAACACTATCATTCGCCGCAATTCGCTGAAACAATAGGGTGTTAAACTTGTGTCTGTCGGCTATGAATGCGTTTAAATAAGCACATTATCTGCGCTGTTTCCACAGACAAGAAGactattaattatatattataatgattcACTCATAAGAATGAACCATCATGTCTCCCAGTGCAGACAGCATTAGAACAGACGAGGCTCGAAATCGCAACTGTATCCAACTATAATTGTATTTCAGCCAAagacgttattattattaacacattatcaTTCCGTAAGAGATGGATGTAACTTTCTTTGTTCTAAGGCGTAGTAGAGTAATAGTAACCATAaggtgctttatttaatttgaaactgatGGACCTGGACATAGTTCTCCAGGAATAAGTTAATATAGGTGCTCGCACATTGTGCTGTTGCTGTGACTGAGTTGCTTTCCCAGGTCATGATGCTGAATTCCCAGGGTTCAATAGTCAGGAGATGGATCTTGCAAGAGGCTGTCCGCCTGTACAGTAAAGTGCTGGGCAGTGGGAGGTTGGCACCTGCGCTGTCTGTATGGGCGAGTCGCTGTGCCCTGGGGCACTTCTCCACCAGCCGCTCCCAGTATGCCAAGAGCAGGGCATTGAAACCCAAGAAAGCCATTTCCGAAAAAAAGCTGACTCGCTACTTCGTTGACCACAGGAGAGTGAATCTGACCGCGGGGTCGGGAGGCAAAGGAGCGTGCACTTTCCTCAGCGAACCCAGGAAGGAGTTTGGAGGCCCAGATGGTGGAAATGGAGGCGATGGAGGAGACGTTGTCATAAAAGTCGACCAGCAGGTGAAATCCCTGGCACTGGTGTTTCCCCTCTACCGCGGGACGGACGGAGATCCGGGGGGCAAAAAAAATTGCTATGGCCGGAACGCAGAGACCACCTACATTAGAGTACCTTTAGGAACCATAGTGAAGGAGAACGGGAAGGTGGTGGCTGACCTGTCCACCCAGGGGCAGGAGTATGTCGCAGCATACGGTGGAGCGGGGGGCAAGGGCAACCGCTTCTTCCTCTCCAACGAGAACCGGGCGCCGATGACTGCCACGCCAGGGGAGCCCGGGCAGCAGCGGATACTGCACTTGGAGCTGCGCACCATGGCACACGCAGGCAtgGTTGGATTTCCAAATGCTGGGAAGTCTTCCCTTTTGCGCGCAATCTCCAATGCTAAGCCAGCTGTGGCTGCTTATCCCTTCACTACACTAAACCCCCATGTTGGCATTGTGAAGTACCAGGACCATGAGCAAGTGGCAGTTGCTGACATCCCAGGGATCATCCGAGGGGCGCACGTGAACCGGGGCCTCGGGATCTCATTCCTGCGGCACATCGAGCACTGCCGCTTCCTGCTCTTTGTCTTGGACCTGTCGGATCCGGAGCCCTGGGCGCAACTCCAGGACCTGCGTTTCGAGCTGGAGCAGTACGAGCCGGGCCTGTCCGAGCGGCCGCAGGCCATCGTGGCTAACAAGGCGGACCTCCCGGAGGCCCTTGCCAACCTGGCCGCCCTGAGGAGCCGCGTGGCACAGCGGGTCATCCCCGTGTCAGCACTCACGGGAGAAAACATCGGGGAACTCATCCTGCACCTCCGGGAGCTGTACGACGGCTACCTGCTGACGGAGGAGAGAACGGGAGGGCAGCCAGTGAGGTGGTGATGTGCAGCGACTTGTCTGAGTCACAATTGCAGCCCCGTATCATTCGAGCCCACAGGCAAATGTGGTATGTGTTATTTATGGTATAggttgtttatgtatttatttatttaatctcaaaaCATCAGAAACCACCATGGAACATGCATTCTGGGCCTTTCTCTTCGTTGCAGACTGCAGGCCCGTGGCACAAACGGCAGAGGCCCACAACTGACAATAACACCGATAACACTGCAATCCTGCCGGCTCCCAGGCCCAGTTCAGACCCACGAACCCCAGCACACAATTGTGCTCTGCTCCTGGGGAATCCCCGTCACAGCCAGCTTGCAAAagtatattttcaatttcaaccacatatttatagattttttaaataattatttttctttaggaAATCTTAATTATGAAgacattttatgtttatatttgtatctcttttttttcttacaacGAGCTAAGGCATCCCAGTGTTATGTTTTGAGCAATTAAACATGcttaaatgtttatgtataatTGATATAATGAATTCAAACTGTGAACTGTATTGTGt

Function

GO: NA

KEGG:

id description
K03979 obgE, cgtA, MTG2; GTPase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008168 True 2440 mRNA 0.49 6 44766145 44770112

Neighbor

gene id symbol gene type direction distance location
AMCG00008169 ss18l1 coding upstream 5314 44753045 ~ 44760831 (+)
AMCG00008161 lsm14a,lsm14b,LOC105018105 coding upstream 17574 44743630 ~ 44748571 (+)
AMCG00008162 cdh4,LOC106571924 coding upstream 82445 44665636 ~ 44683700 (+)
AMCG00008167 NA coding upstream 112240 44577372 ~ 44653905 (+)
AMCG00008160 NA coding upstream 497822 44259975 ~ 44268323 (+)
AMCG00008170 NA coding downstream 2956 44773068 ~ 44774474 (+)
AMCG00008171 NA coding downstream 175640 44945752 ~ 44949206 (+)
AMCG00008179 NA coding downstream 228117 44998229 ~ 45012622 (+)
AMCG00008178 rae1,LOC105026338 coding downstream 242653 45012765 ~ 45019906 (+)
AMCG00008181 NA coding downstream 337301 45107413 ~ 45121480 (+)
G28956 NA non-coding upstream 16237 44691541 ~ 44749908 (+)
G28931 col9a3,LOC106571930 non-coding upstream 709537 44053965 ~ 44056608 (+)
G28862 NA non-coding upstream 870194 43894109 ~ 43895951 (+)
G28678 NA non-coding upstream 1564942 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 1645364 43109050 ~ 43120781 (+)
G28995 NA non-coding downstream 25812 44795924 ~ 44798463 (+)
G29148 NA non-coding downstream 583604 45353716 ~ 45354079 (+)
G29153 NA non-coding downstream 607899 45378011 ~ 45378353 (+)
G29223 NA non-coding downstream 769657 45539769 ~ 45542206 (+)
G29271 NA non-coding downstream 955871 45725983 ~ 45734261 (+)
AMCG00008132 NA other upstream 1460615 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 1610073 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 1657903 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 2328917 42413632 ~ 42437228 (+)
G28395 NA other upstream 2772768 41992859 ~ 41993377 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 253036 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 377285 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 570462 45340574 ~ 45343914 (+)
G29183 NA other downstream 670401 45440513 ~ 45441064 (+)
G29353 NA other downstream 1497779 46267891 ~ 46268327 (+)

Expression


Co-expression Network