AMCG00008169 (ss18l1)


Basic Information

Item Value
gene id AMCG00008169
gene name ss18l1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44753045 ~ 44760831 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008169
atgtctgTCGCGTTTGCTTCGGCTCGCCCCAGAAGTAAAGGGGAGGTGACACAACAGACTATACAGAAGatGCTTGATGAAAACCATCACCTGATACAGTGTATTATGGACTATCAGAGTAAGGGGAAGACGGCAGAATGCACTCAATACCAGCAAATACTGCACAGAAACCTGGTCTATCTGGCTACAATAGCAGACTCCAATCAGAACATGCAGTCTTTGTTACCTGCACCTCCCACCCAAAACATGAACATGGGACCAGGAGGAATCAATCAGAGTGGCTCGAGCCAGTCTCTTCACTCCCAGAGCAACCTGAATGACAGCATGGCCACTGGTCTGCCACCCACCTCTCTCATGCAGAGCCAGATGAGCAATgGCCCCAGTCACGTGTCCATGCAGCAGTCCGGTCAGACATCCCTCCCCACCACCTCCATGAGCATGCCGGTCAGCAGCCATGGCTCGGCCACAGGCTACAGCCACTCGGTGTCCTCCTCCCAGGGCATGCAGATGCAGAGCCAGGGCCAGTCTATGGGCAACTACGCGTCTCGGACCAATCTCAACATGCAGTCCAACCAAGTCACAATGATGCACCAGCAAGCTGCAACATCGCATTACCCCTCTGCACAAGCTGGGAGCCAGCACTATCAGGGGCAGCAGTCCATAGGCATGCTGGGACAGGGTAACCAAGGCAACAATATGATGGCACAGAGACCCATGGGAACATACCGTCCCTCACAGCAAGGATCCGCCGCGCAGTACATTGGCCAGGAGGAGTTCTACGGCGAGCAGTACGGACACAGTCAGAGCTCCAGCGAGCCCATTAACCAACAATATTACCCCGATGGCCACGGAGAGTATTCATACCAGCAGTCTTCATACAGTGAACAGAGCTACGAACGAACCTTCGAGGAGTCCTCTCAGCACTATTATGAAGGA

Function

symbol description
ss18l1 Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of dendrite morphogenesis and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within dendrite development. Located in cytosol; kinetochore; and nucleoplasm.

NR:

description
PREDICTED: calcium-responsive transactivator

GO: NA

KEGG:

id description
K15623 SS18, SSXT, SYT; protein SSXT

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008169 True 936 mRNA 0.54 8 44753045 44760831

Neighbor

gene id symbol gene type direction distance location
AMCG00008161 lsm14a,lsm14b,LOC105018105 coding upstream 4474 44743630 ~ 44748571 (+)
AMCG00008162 cdh4,LOC106571924 coding upstream 69345 44665636 ~ 44683700 (+)
AMCG00008167 NA coding upstream 99140 44577372 ~ 44653905 (+)
AMCG00008160 NA coding upstream 484722 44259975 ~ 44268323 (+)
AMCG00008157 NA coding upstream 621326 44106455 ~ 44131719 (+)
AMCG00008168 NA coding downstream 5314 44766145 ~ 44770112 (+)
AMCG00008170 NA coding downstream 12237 44773068 ~ 44774474 (+)
AMCG00008171 NA coding downstream 184921 44945752 ~ 44949206 (+)
AMCG00008179 NA coding downstream 237398 44998229 ~ 45012622 (+)
AMCG00008178 rae1,LOC105026338 coding downstream 251934 45012765 ~ 45019906 (+)
G28956 NA non-coding upstream 3137 44691541 ~ 44749908 (+)
G28931 col9a3,LOC106571930 non-coding upstream 696437 44053965 ~ 44056608 (+)
G28862 NA non-coding upstream 857094 43894109 ~ 43895951 (+)
G28678 NA non-coding upstream 1551842 43177802 ~ 43201203 (+)
G28637 NA non-coding upstream 1632264 43109050 ~ 43120781 (+)
G28991 NA non-coding downstream 7846 44768677 ~ 44816663 (+)
G28995 NA non-coding downstream 35093 44795924 ~ 44798463 (+)
G29148 NA non-coding downstream 592885 45353716 ~ 45354079 (+)
G29153 NA non-coding downstream 617180 45378011 ~ 45378353 (+)
G29223 NA non-coding downstream 778938 45539769 ~ 45542206 (+)
AMCG00008132 NA other upstream 1447515 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 1596973 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 1644803 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 2315817 42413632 ~ 42437228 (+)
G28395 NA other upstream 2759668 41992859 ~ 41993377 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 262317 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 386566 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 579743 45340574 ~ 45343914 (+)
G29183 NA other downstream 679682 45440513 ~ 45441064 (+)
G29353 NA other downstream 1507060 46267891 ~ 46268327 (+)

Expression


Co-expression Network