AMCG00008171


Basic Information

Item Value
gene id AMCG00008171
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44945752 ~ 44949206 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008171
ATGAATTCGGCTCCAGATCGTGGCAAAGAATGCCTTCCTCCAAAGAAGCGAGAGTTCCAGGCCTTGAAGCCCGCCGAACAGCGCCCCATGGATGAATTCAAGCCGCCTCCACCCCACATGAGCCGAGCTCTGGGCAAGCCAGCAGAGAGCAAGGGAACTCTGTCACATCCACGCTATGGCAAGGATCCTCTGCCACCGCCGCCGAAGTTTGTGCCACCTGATCCACCGCCTTTTCCTTTGCCCTTCTCCTTTCCCACCACACAGCCAAACCTGTTCATTTCCAACCAGATGGGAGACAAGCTCAGTCCAGGTTCGTCCTCTTGGAGGGACCAGTCTTTCAGGATGGGGGACTCTGCTGACACCAGCGGTCATTATTCACGATGGAAGCACAAAGGAGGAGCAGGGAATCCGCACCAGGACAGGGGTCACAGTTCATATCCGAGTGCTCTTCCTGCAGAGTCGAGGGACTTTTGGCCTTTCTTCAATGTCAAGCAACGCTTCAGCTCCCCCCCCTACCTGTCTCATGATCTACATTTATACCAACCACCACTATATCCCAGAGAGCACTTGCCGGACAGGAGGAAGGAGAATGGGTATGACGGGGCAGACAGCAGGCCCTCACACAGGAGGTTGCAAGGGGGTCCAGAGCCTGACTACTACAGCAAGATGGAGCCAGAGAGTCTTCATGGGGCTTGTACCAATGGAAAGAGGAGATACCTGGGTGAGCAGAGATCCCTGGGAGTGTCATCCACTAAGGATGGCTGTTTTCAGGAGGCCCCCAGCACACATTCCTCCCTTCAGGAAAAGGAACCTCAGCTGACGCTCAAGACACACCCAAGGATCAGCACAGAAGTCAAGAGTGCCAAGCAGTGTCCTATGAGTACTATGGCACAGATCTATTACAACATTCCACCTGCATATTCTGCCCTGGCACAGATGCCCCTCGCTTATCCCATTTATAGTCACCAAGGACAGGTAATGGCTTTCCCGGACTTAGGACTTCAGACGGAAGCAGCCCACAAATTAGGAATCTCAGGACATTCCCCGCTGGCAGTAGACAGGGACTCGGAGGGGCCGAGAGGAGGGAAATCTAACAGCCACGGTTCTGCCCCCTCTCCCGGAGCGCCTATTGACTATTCGAGTTCCTCGCCAGTAGGGTCTCGAGCACGAGCCGCTGCCACCACCCCAGCCGCCTCCAGCCCGTCTCCCAGCTACTCTCCCGGTCTGGCCCCCCCCGTGGTCCTACCTCACTTCACAAAGGGGTCTCTCATCGAGCTGAGCACGGGTGAGCTGAGGAAGGTGGAGGAGCTGCAGACAGAGGACTTCCTGCGCTGCGCCGTAACCAGCCCTGAGTTTCATCTGGGCTACTGCACCGTTCAGCACATTTCCCCCAGCCAGAGCCAGGGGTTCGCCCACCTGCAGGTGCTGCTGGGGGACCAGAACACTCAGGAGCTCCTCAAAGTCTTAGTTGAATACCCCTTCTTCGTCTGCAATCGAGGCTGGTCTTCGTGCTCCCCTCAGAGAACTGCCCAGCTCTACGGACTCCCCTGCCATCAGCTGGCTGCTGGCGACGTCTGCCTGGCGCTCACACCCACGCCCACCCCCGCGCCAGCACCCCCCACGGCCTCACCCACTCCATCGATGCACCATCCGAGCCAGGCCGGCGGGGGGGACTTCGCAGTGCCATCGAGCCGCTACAGGGACCCCCGCACGCAGGGCAGTATGGGGTCCACGGAGAGAACGCACAGGGTGGACAAtatgcctcctcctcctccaccacctgcCAGGCAGAGCAGGGAGCAGGCTCAGGGGACCCACCGGCCGCCCAAGACACGCAAGCGGCGGTGGTCAGCGCCCGAGCTCAGTGGACTCTCCAGTGCGACTCCAGATTTACCTCACAGTTCGAAGCACAGGAAGCAGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008171 True 1923 mRNA 0.59 2 44945752 44949206

Neighbor

gene id symbol gene type direction distance location
AMCG00008170 NA coding upstream 171278 44773068 ~ 44774474 (+)
AMCG00008168 NA coding upstream 175640 44766145 ~ 44770112 (+)
AMCG00008169 ss18l1 coding upstream 184921 44753045 ~ 44760831 (+)
AMCG00008161 lsm14a,lsm14b,LOC105018105 coding upstream 197181 44743630 ~ 44748571 (+)
AMCG00008162 cdh4,LOC106571924 coding upstream 262052 44665636 ~ 44683700 (+)
AMCG00008179 NA coding downstream 49023 44998229 ~ 45012622 (+)
AMCG00008178 rae1,LOC105026338 coding downstream 63559 45012765 ~ 45019906 (+)
AMCG00008181 NA coding downstream 158207 45107413 ~ 45121480 (+)
AMCG00008188 ttll9 coding downstream 279436 45228642 ~ 45232701 (+)
AMCG00008186 NA coding downstream 290732 45239938 ~ 45242352 (+)
G28991 NA non-coding upstream 129089 44768677 ~ 44816663 (+)
G28995 NA non-coding upstream 147289 44795924 ~ 44798463 (+)
G28956 NA non-coding upstream 195844 44691541 ~ 44749908 (+)
G28931 col9a3,LOC106571930 non-coding upstream 889144 44053965 ~ 44056608 (+)
G28862 NA non-coding upstream 1049801 43894109 ~ 43895951 (+)
G29148 NA non-coding downstream 404510 45353716 ~ 45354079 (+)
G29153 NA non-coding downstream 428805 45378011 ~ 45378353 (+)
G29223 NA non-coding downstream 590563 45539769 ~ 45542206 (+)
G29271 NA non-coding downstream 776777 45725983 ~ 45734261 (+)
G29291 NA non-coding downstream 938743 45887949 ~ 45888412 (+)
AMCG00008132 NA other upstream 1640222 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 1789680 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 1837510 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 2508524 42413632 ~ 42437228 (+)
G28395 NA other upstream 2952375 41992859 ~ 41993377 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 73942 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 198191 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 391368 45340574 ~ 45343914 (+)
G29183 NA other downstream 491307 45440513 ~ 45441064 (+)
G29353 NA other downstream 1318685 46267891 ~ 46268327 (+)

Expression


Co-expression Network