AMCG00008173


Basic Information

Item Value
gene id AMCG00008173
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44852289 ~ 44872215 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008173
ATCTGTCCACGCAGCTGTAGCTTCTGCTTTGATCCCGTAGATCCAGCATAACCGGGCACGCCTGACTTGAACAGTCGAGTGATACTCTGCGTTACAGGGGACTTGTAGCGACCAGGTTTGTCGTTAGTAACACACAGCAGGCGCGTCAAACAGCAGGACGCGGTTCAAGTGACACAACTGCAGCGTTATCGCCCGATATCTGTGACTCGGCGATGGCAAAAATCGTCCCAGTTCTCCTTCTTTTTACTCTTGCATCAGTCTTTGCAGAGGGTGACTGGCCTTCGTCTGCTGAGTTGAACAGGGAAAAGAGGGAGCTGCTGAGACGTAGCAAGAGACGGTGGGTGCTGACCACCATAGAACTGACCGAAGGAGACACAGGCAAATTTCCTAAGTGTGTTTCAAGActttttaatGACAAGGAAAGCTACTGCATTGAGAAAAATCTTAAGTGTCGATACACTATCTCTGGTGAAGGGGTGAATGAGTTTCCAAGAGGCATATTTTTTGTGAATGAAACCGATGGCAGAGTGTATGTGACTAAATCTTTAGATCGAGAGGAGCGAGAGACGTATCACatcaattttaatatttatgatatCACCAACAACCGGATGGATGACCAATTATCTTTTGATGTTGAGGTCAAGGATCTGAATGACAATGCACCTAAGTTCATATTACCTGTCCAAAATGTCTCAATGAAAGAGATTGAGGGCCAAGGTAAACTACCAATCACGGTGGACGCAAGAGATGAAGACAAAATATACACTGACAATTCCAGAATAAAATTAACGGTCCTTTCTCAGACGCCTGCCTTTCCATTAATTCAGTTAAAAGAAATAGAAGGCACAAATGTAGCCAGGCTGACCACCAACGGTTGCTTTGATTATAAGAAAGACAAATACTACAAGGTTCTCATCATGGCAACAGACCATGGAACACCCCAGCTTTCCTCTACGGCTGTAATCCATATTAATATTCAGGATTCAAACAATAACGCTCCAGTATTTACCAAGGAACAATATCAGGCTGAAGTTGATGAGATTGTGTCCGATGTGGTCATCCTGAAGATGGCTGTGAACGATGCCGACACGCCGCACACCCCTGCGTGGAACGCTGTGTACAAAATCCTTCAAGGCAATGAGGAGGGCAATTACCAAATCGAGACGGACCCAAACACCAATGAGGGAATCCTGAAAGTCATCAAGGGTAAAGATTACGAGAAGAATGCTCTGAATAATTTGTTGATAGCAGTGGAAAACGAAGAGCCTTTTGCGGTATGTGGAGGTACCTCAAAAAGTGAGGCTGGGAGAAGCACTGTGGCTGTGGCCGTGATGGTGAGGAATCTCAATGACCCCCCCTTTTTCAAATCCTCGGTCATGTCTGTACATCACATTGAGGAGAGCGAGACTAGGAAAATACTGGGAAAGGTTGAAGCCAACGATGATGAAACACCACCAAACATGATGAGGTATAAATTGGCTGAGGATCCGGCCAACTGGGTGTCTGTTAACGAACAGACTGGTGAAATTACAGCTGTCAAAAAGATGGACAGAGAATCACCCTATGTCAACAACAGTATCTACACTGTTGTTATACATGGAATTGATAATGGAAAACCTCCTCTGACAGCCACAGGCACTGTGAATATCCACCTGGCAGACATCAATGACCACACACCCTACCTCTCTTCAAAAAACCTGCACCTGTGTACTGACTCTGATGACAATTCGGTGATTGTGGTGGCCAAGGACCAAGACATAGAGCCCTATGCAGGCCCATTCACCTTCGAACTGCTTGACAAGGGCAAAGGCGTGCAGGAGAACTGGAAACTGGGGCCCTCAAATGAGAATGGAGTTACTCTGGTACGTCTAAAACAATTGGCAAATGGCATCTACACCGTGCCATTGAGAATCGAGGACAAACAGGGTTTGGTGATAGAGGAGGATTTATATGTACAGCTATGTGATTGTGGGAAAGAGAAGGTGTGCAAAGCCCTGAAGCGTCAGACCTCTGGTTTAGGTGGAGCAGCCATTGGGCTGGTGATAGCTGGTGTGCTCCTCTTTATCCTTCTTCTGGCTTTGTGCTTGATGTGCGAGTGCAAGGAGAAGTTTTATCCCATACAAATCGATCCCAGGGGGGAAGGGAATCAAACGCTCATCAAGTATAACGAAGAGGGAGGAACATTCTGTCAGAGGCTATGCAATTTGGCCGAGAAAGAGATTGACTACCAAGGATACGGGCCACGCATCTACACCTATGAGGGCCAAGGCAGTCAGCCCCACTCCCTCGATCAGCTCTCCATGTTCAACAGCAACCACAGTCTGCATTTCATGGCAGACTTAGACTCAAAGTTCAACACGCTGGGTGAGATATGCCAACAAACCATGCAGGAGAAAGGCTTGAAGTTGTAAAGAGCATTTCATGAACCAAGTTTTTGTCTGGAAAGTGACTCAAAGTGCCCACGAAGCTACTCAAATAAATGCTTCCTTTATATGATGGAAACCTAgtcaagaaaaataatgtacttgaCTAATACTGGTTAAAATATAGCCAGGTCTGATCGTTAACAATTACTGTCATTCTGGTTTGATGTTTGCAGCCTAAGGAGGTGCAGTGACACAGAAGACAAACAATACTGTAACTGTTAGGAATGTAGGGGTTTTTTAAGAGATTATTTCCCATacattttacttattattaataGGTGGAGTGACATTTTTACAATTGTTCCAAGCCCATTTTGCCTGAAGGCCTgattcattaaatacattgtgtttgtattgataATATGCAAATTTAAAGAACATGCTAGTTAATTTGCTGCACCTTAACTGAATACATTCCAGCGCACTGGATTTATGAAACTTTTTCAATTTCCCAGTAATATATAAAGGAATTGTATATTTGATCAAATACCctacttttataatataattcataGGAGGTTATCAGTTTTTGATTAAACTAATAAGATTATTTAGGTATAGGATGTAGGGAGTTTTCTTGTTTCCTGCTCAGAATCTTTATCCAGAAATGAAAGGACGGCCTCCTTTTCTGAATGTCTGTATGATATGGGATTTGGTTCattagtttgtttaaaatacatgtctTGGAAGAGTAGACATAATTATGAATACTTTCACATTTGATGGAAGTTGGTGGTGGCATTTcctgatatacatatatatttttttctttaatacatcttaaaaacatttcagaatgtaTAAGTGCAGTAACTCAAAATAGTTGTAGAGGGACCTAAAATGTTATAGTAACAACAACAGGGCATGCTGTATACATATTAGGGTTAAGTATTCATAAAGTGTTGggtgtgtattaaaaaaaaaaaaacatgttgcttttattgagaaaaataaaattgtttgatttgttttcttttgatttgtcttttaaattacattctttGACTTCgactttgtattgtttgtattaatacTTTGTCCCACTGCTTAAGAGTGGTCAGCACGGTATTAAACCTGCCACGTGCTGCTATATTCctgtatttgttgtgtttccTTCATTTCATTGAATTGCAGTTTCACAGATATCAGTTTACTTCTTGCTTTACAACAGCAGCCAGATACAGTaagctattttgttttgtagttgaACTGTAATGGGTACctagacatttctttaaaattattttttaaaatgggGTTGTTTAAAATGGGGATGTACCTAGAACAACATGGGGGAGAAACTGCTGTAAGAAATACTATTTTTTGTtatcttgttttatgtttatgttggTTTGTTGCAAAaccatatttgtgtattttgaaaataaagctcTGT

Function

GO: NA

KEGG:

id description
K22658 CDH26; cadherin 26

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008173 True 3825 mRNA 0.41 14 44852289 44872215

Neighbor

gene id symbol gene type direction distance location
AMCG00008174 NA coding downstream 38209 44795926 ~ 44814080 (-)
AMCG00008166 NA coding downstream 66103 44778736 ~ 44786186 (-)
AMCG00008163 NA coding downstream 73756 44776653 ~ 44778533 (-)
AMCG00008165 psma7,LOC106571922 coding downstream 99831 44749090 ~ 44752458 (-)
AMCG00008164 NA coding downstream 111374 44721739 ~ 44740915 (-)
AMCG00008172 NA coding upstream 6795 44879010 ~ 44883212 (-)
AMCG00008175 NA coding upstream 79183 44951398 ~ 44963177 (-)
AMCG00008176 LOC103370837,LOC107750885 coding upstream 99125 44971340 ~ 44983745 (-)
AMCG00008180 bmp7b,bmp7,LOC105030895,LOC107601355,LOC106571911,LOC107750885,LOC106566746 coding upstream 125270 44997485 ~ 44997916 (-)
AMCG00008183 NA coding upstream 190566 45062781 ~ 45070971 (-)
G28976 NA non-coding downstream 164114 44682437 ~ 44688175 (-)
G28978 NA non-coding downstream 170520 44681425 ~ 44681769 (-)
G28977 cdh4,LOC101161393 non-coding downstream 172247 44679816 ~ 44680042 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding downstream 185712 44666343 ~ 44666577 (-)
G28973 NA non-coding downstream 364870 44487210 ~ 44487419 (-)
G29081 NA non-coding upstream 162230 45034445 ~ 45036413 (-)
G29170 NA non-coding upstream 481592 45353807 ~ 45354086 (-)
G29182 NA non-coding upstream 547375 45419590 ~ 45420462 (-)
G29192 NA non-coding upstream 589564 45461779 ~ 45462530 (-)
G29206 NA non-coding upstream 617792 45490007 ~ 45490890 (-)
G28970 NA other downstream 434093 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 1268876 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 1732125 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 2087635 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 2451215 42359900 ~ 42401074 (-)
AMCG00008192 NA other upstream 277286 45149501 ~ 45228504 (-)
G29301 NA other upstream 1178480 46050695 ~ 46054346 (-)
G29361 NA other upstream 1608731 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 2707924 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 2794427 47666642 ~ 47918462 (-)

Expression


Co-expression Network