AMCG00008174


Basic Information

Item Value
gene id AMCG00008174
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44795926 ~ 44814080 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008174
CAAGCCCCTAGTTTCAGTTCTACTTGCACTATAGGAGAGTGAAGAATAGAAATAGTAGCCATCTGTGCCTGGGATTATAACTGAACCTGTTTTGGGTGCACAATGAAGATTGTTATTGTACTTCTCCTAACTATTTCACACTTGGACATGCTCAAAGCTTCTTCGGCAGTACTGGCACGTCAGAAGCGAAACTGGATCATAGAATCCTTTAGCATTGAGGAAGGGAATAAGAGGTCTATCCCATATGTTATTGGAAAAATTGTGCTGGAGCGTAACTACACTGTGAGGTTCACATTGACAGGCCAGGGGATAAACAAGCCACCCATCAATAGTCTTGAAATCAATCAGGACAATGGAGAAATTATGTTGATAAAAGAGATAGATTATGAAACGTACACCAAACTGGAGCTGGTATTCACAGCACTAAATCCTAATCAAGCTGTGGATACACAACTTGGAGTTCATATAAGTATCTTGGACATCAACGACAACGCACCAGTTTTTCAGTTAAATCTATACAATTTTACAGTCAAAGAATCAATGAAACAAGGAGACATACTTGCTGTCATACACGCTATGGACAGAGACATGCCCAATAGCgaGACATCTCTATATAAGATCATTGTTGAAGCTAAAGACAGGGGTGATAAAGTACAGCTGTCAAGCTCTACTACAGTTGTTCTCAATATAGAAGATGCAAATGACAATCTTCCGGTCCTTGTTAGCCCCATGGCAACTGGAAAGGTGAAGGAGAGGGAGACGAACGTCACTGTTCTGACTATAAAGGTGACCGACAAAGATAAGCCATCCACACCTGCATGGAAAGTACGATATTACATTGAGGATGACAAAGACGGCCACTTTCAGATCGACATTGATGAAAAGACCAATGATGGAATCTTGAAAGTTATTAagCCTCTGGATTTTGAAAGTGGCATCCTGTGGAACTTGTCAATCTCAGTGAAGAACGAGGAGGATTATTTCTCATGCATTGTGAAGAACAAGAAACCAAGGGGGCTGTGGGATGTGGAAATTATACATCTTGATAGAAATAAAGGGAAATCATCTATATCAGTGAATCAGCGCGTGGTCATCACTGTGGAAGATGTCAACGACCCCCCAGAATTCAAAAAAGGCACTGAGAAGGTTTACGTGAAAGAAAACGTAAAGATTGGTCATTTCCTGCAGAATGTCACTGCCACAGACATGGACAGTGGCCTTTTAAGCGTAATTACgTATAAAGTAGCAGAAGACCCAGCAGGGTGGGTGACTGTGAACTCTAAAACGGGTGCAGTTACAACAAAAGGCATAGTGGACAGAGAAAGCAAATATGTTGTGAATAATACCTATACTGTGGTTATACATGCAGTTGATAATGGAAAGCCCCCCATGACGGGCACTGTGTTGTTGAAAATCTATGTGAATGATGAAAATGACAATACGCCCACCCTGATTTCGAACATGATAGACATATGTATGGCAGATGGAGAGTCAATGAATAATATCACGGCTGAAGACATAGATGAAGGTTATAACTCTGGGCCATTCCGCTTTGAGCTGCTCAATGCGAAAGAACTGAAGGGAAAATGGAGATTGGATCCCACTTACGGGGAGACTGTTAACCTCATCAGAGGAAGCAAGGTTTTCAGTGGAGTGTATGAGCTATCTGTGAAAGTCTACGACAGACAGGATTACTGGGCTCTACACAACCTCacagtgactgtgtgcaagtgtacttCATTGCCACCCAACTGCAGACACAGGATGTCCACAGCAGCACAGATTGGAGGCGGGGCTCTAGGGATCATGTTTGTGGCCATGTTTCTATTGCTGGGTTTGGTGCTTTTGGCAAGTGTACTCTCATGCAGACACATTAAACAAAGCGCTCAAATTGATGATGATGGAGGGAACACGTTGCTGGTATTCAATACTGAAACACCTGGATCGGACTGCACAAGACTATTCACAATACAAGGTAACAAGACTGAACACCAGGATTATGACCCTCATGTGTATGCCTATGAAGTCGACTCCATAACTGATGCAGACCTAGACGCCATTTCTATCACTGACATTGAGTTTGTGCCTGACCAAATGCTACACGTGGGACCACAGTTCACTCAACTCGCCACAATTTGTATGTCCAGTATGAACAAACATTAGAACATGTCAACTGGAAAGCATTTTGTGATGATGAGACAGGCCAAGGCTAGAAAGAGGTTTCTGCATCCTGCatacaggttttttttcccatatgaagaaaaatataaaggagacattccattttaaaaaaggacagATACATAGATTATGTTTAATGGAATAAAGTGAAGAATTATCTGCCACAATAGCAGTGAAGGCAGTTGACACTATACCTCTTTATGTACAATTCTGTAGCAAATGTAGCTAAAGAAtaaaagatatcttcaaatgaagCCTTATAAAGCTCTGGAATATATACCAGGAATATATTCCAATAATAGAAAACAGTCAATACCTGCTAAGAAACAGAAGTCAAACAGATCTTGAATAATCGATTGTTGGATTTCACCAGGAGGCCCTTATATTTGATACGCACTTATGTTTAGAGTAATGCAGTGAAAAAAGACATAGCCTAAACATAAAGATTCTCCGAAAACAAAAGAGTTTTTGAATAGTTTAAAATCCCTTCAAATCTAGTGGGGCAAAACTGCCCAATATTCAAAGTGTACATAGaatgtatttgatttacttGGAAGGATGGTGTCTGGGAAGGTAGATGGTATGTAGATGGTATGTAGATGGTTTCTTTTACTTCATGATGTAGGCTCCGAATCTACAGTGCAATGTTAATGCAGGGTATATGGTGTGCTGGTAGCAGAGAgagtaaaaaaagtaaaaacaaaatggctaaTTGAATGTGAATATCCATATTTCAGAATCTGGACATTTGTAAAATTCTCTGTGTGGTAGCAGTATTAAAGGTGCTTTTCagattaatatatgtatataaatatgtacaaaatactatttaatCTACTCCCATTTTGTACAATAACAGTCATATTACATAGCAGTGCTGGGGGGAAGATATGTGTTGATCACAAGTTTCAATGGATGGCCTCATTTGTCCTGCACTAAACAATCTATTTCAATAGCCTGAAGAACCTTTTGGAGCACATCCATAACAGTGATGTGAAACTAATGCAGTTTGGTCTTGCAGTGACCAtctaatattttactttttcctgtCTTTGAAAAAAAGGGCAAAAGCCAAAAGATTTAAATTGAAAGACATGGGGATGGGAAACAGTGAATCAGTACACCACCACTAGCATTGTAATGAACAATGAGAAGGATGGAcatctacattttctttcatttgttaattactgaaattaaatgttaacatttgttattgtaaaaaaagaagaacacatGACAACATTGATCTGTGTACCCAGTAGTGGGTAAGATAATGGGTACACccacattttaacattgtttgcGGATTTTCACACCAGTGTTGGGATGTCTACATTGTGTCATGTCTaccacaaacacagacaggttCATCTCGTTTCTTAACACAAGCTCAAGGAATATTAGGCCATAGATGTCCAACAAATCAGTCAAAACAATGGAGTGACAACAGAAATAGTCTTAACAGAAAAGGACAACAAATCTGAGCTCTTTTTTCCTAGACCTGTGGTGTGTGAATGAGTTGCCTTGAATGACAGGCTAGTTGACACTTACAAAATAGTATTGGATGTCAACTTATCCCTTCTTTATGTAGGCTATGGCACTGATGGATGTACGCAACCAACTCACTTTGAGATTCTCATCAACACCCTCTGAGACTCAAATGAGAGTGAAACAACAGTTGGGTCTACCAATGTCTAGCACTgaatatatctgtgtgtatgtttatgccTTTAAGTTCATGTTTGGGGTGTTGGTTGCTTTTGTTATGAATTGTGTAACAGGCTGTGGTTTTGCAACTTCCCTGAAGGCTGTGGACAAACACATGAGCATATctataaataaagattatttaGGGA

Function

GO:

id name namespace
GO:0060113 inner ear receptor cell differentiation biological_process
GO:0035315 hair cell differentiation biological_process
GO:0042490 mechanoreceptor differentiation biological_process
GO:0042491 inner ear auditory receptor cell differentiation biological_process
GO:0009913 epidermal cell differentiation biological_process
GO:0060563 neuroepithelial cell differentiation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008174 True 4040 mRNA 0.39 13 44795926 44814080

Neighbor

gene id symbol gene type direction distance location
AMCG00008166 NA coding downstream 9740 44778736 ~ 44786186 (-)
AMCG00008163 NA coding downstream 17393 44776653 ~ 44778533 (-)
AMCG00008165 psma7,LOC106571922 coding downstream 43468 44749090 ~ 44752458 (-)
AMCG00008164 NA coding downstream 55011 44721739 ~ 44740915 (-)
AMCG00008158 NA coding downstream 713078 44073663 ~ 44082848 (-)
AMCG00008173 NA coding upstream 38209 44852289 ~ 44872215 (-)
AMCG00008172 NA coding upstream 64930 44879010 ~ 44883212 (-)
AMCG00008175 NA coding upstream 137318 44951398 ~ 44963177 (-)
AMCG00008176 LOC103370837,LOC107750885 coding upstream 157260 44971340 ~ 44983745 (-)
AMCG00008180 bmp7b,bmp7,LOC105030895,LOC107601355,LOC106571911,LOC107750885,LOC106566746 coding upstream 183405 44997485 ~ 44997916 (-)
G28976 NA non-coding downstream 107751 44682437 ~ 44688175 (-)
G28978 NA non-coding downstream 114157 44681425 ~ 44681769 (-)
G28977 cdh4,LOC101161393 non-coding downstream 115884 44679816 ~ 44680042 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding downstream 129349 44666343 ~ 44666577 (-)
G28973 NA non-coding downstream 308507 44487210 ~ 44487419 (-)
G29081 NA non-coding upstream 220365 45034445 ~ 45036413 (-)
G29170 NA non-coding upstream 539727 45353807 ~ 45354086 (-)
G29182 NA non-coding upstream 605510 45419590 ~ 45420462 (-)
G29192 NA non-coding upstream 647699 45461779 ~ 45462530 (-)
G29206 NA non-coding upstream 675927 45490007 ~ 45490890 (-)
G28970 NA other downstream 377730 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 1212513 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 1675762 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 2031272 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 2394852 42359900 ~ 42401074 (-)
AMCG00008192 NA other upstream 335421 45149501 ~ 45228504 (-)
G29301 NA other upstream 1236615 46050695 ~ 46054346 (-)
G29361 NA other upstream 1666866 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 2766059 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 2852562 47666642 ~ 47918462 (-)

Expression


Co-expression Network