AMCG00008177 (rbm38,LOC101475440,LOC103365886,LOC105906784)


Basic Information

Item Value
gene id AMCG00008177
gene name rbm38,LOC101475440,LOC103365886,LOC105906784
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45023148 ~ 45036416 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008177
GTTTGCAAGCGGTCCATATATAAAAGCCTTTCCGGGAGCTCCAGCAAGCGGCAAGCGGAGCCACCTGCACGGTGTAAGTTGCGAGAGGAAACGTCATTCGTGCCCCCCCCAAAGGAAAGCGAAATTAAACCAAAGAAAGCTACATGGAGTAAACCTAAGCCTTCGAAGGGAAGACGGAAACAGCGGGGGCAggattaaagaaagaaaaggaaagaaaagaagaagaagaagaagaagaaaaaaaagccaagTGTCTATCTACCTCGGGATTTccccttttgtttttatgatttattacatgttttaaacgCTAGCAACACTTTGCCTGATGTGCTGTATTCAATGATACAGGAGTAGGATTGAAGCATATTaagtattattgttaataatctaggagtgatatttatttaatgcttttacaTCAGTTTGTGAACGGGGCTCTGGACGCTATGCATCCAACCATCCAAAAGGACACTACTTTCACCAAGATCTTCGTGGGGGGGTTGCCCTACCACACCAACGACGCCTCGCTCCGAAAATACTTCGAGGTGTTTGGGGACATTGAGGAGGCTGTCGTGATCACGGACAGGCAGACCGGGAAATCGCGGGGTTATGGATTCGTGACTATGTCGGAGCGAGGTGCCGCTGAGCGGGCCTGCAAAGATCCCAACCCCATCATTGATGGCAGGAAAGCCAACGTCAACCTGGCTTACCTGGGAGCCAAGCCACGCAGCCTGCAGACAGGCTTGACCATTGGTGTTCAACAGATCCACCCGAGTCTAATCCAGAGGCAGTATGGGCTAGCCCAGCAGTACATGTACCCCCAGGCCTTCATGCAGCCAGGACTGGTGATCCCCACCCAGATGTCCTCCGTGAACTCTCCCTACCTGGACTACAGCGCCGCCTACGCCCAGTATGCCTCCACTGCCTTCGAGCAGTACCCCTACGCCGCCTCGCCCGGCTTCCTGGGTTACAGCTATCCCACTAACCCGGCCGCCGCCCCCACCACAGTCCAGCAGTCCCTCTCTGCGGGAGCCGCGCCCCCCACAGCTGCCTTTGTCCAGTACCCCCCCCAGCAGGTACACCCCGACCGCATGCAGTGAGAGCTGTCTGGTGGGTTGGGGAATGAAGTATGTAAGAGTGGAAGGGGAgcgaaggaggaggaggaggaggaggaggaggaggaaggaggtgGGGTGCCCAAAGTAGGCTGGGGGAGGATAGGAGGAAGTGTGACTGTTTATTGCACTATGACATGATACAACCCGTGACACCAGGATGATGTTCTGGGCCTGAAGGATACCTGGCCGCATCAAGGGCTTCCAGAAACTCTTTaatacacttattttttatcaaaCAATGGAAACCTGACCCATGTCTGTTGCCAAACGCAGTCCTGACCTGAGCTGTGAGGATCCAAAGTTACTGAAGATCGGAGGAGGAATGGCCAACGTCAAGCTCCACAACTAGGTTCAGTGCAGGAGTAGGAGGGCTGAACTGGAGGCTCAATAAACAATACCTGTGAGCAGAGGAGGAAAACGAGACCCTTTCACCTGTGAAGGgatggaggtttttttttttttttttctccccatttcCCCAGGTTCCGTCAGACGCTGCGGGCTGGGCTCTTAAAGAGTCGGCCTTTCTCAGGAGTGGGAGACCCTAGAGGGGAATTTAAAAGTTACAGTCTCCCTAAAGggacaaaaaagtaatttctggTCTGTTATGAAGAGATCCTAGGATGAGGACAATTCTAGACTTGACATGTTCTTGAAGAAATTAAAGttgtcaaacaaaaataaacctgcaggaatacttattttatttcatgaggCCTTAACTACTATTTCCAGATTCTCATTTTcataccccccctcccccactgtgATTATCATAAGccattctttattattttttaaaggaaaataaacctgaaatgtAGGTAGGACTATCTTTCATTGTCTTTCACATTCATGTTCACTTTTTCTATGTTAAGTTATTGTAGATCAAAGTAGCTCGCATTTGATTTCAATATGCAATCATACAAttggggggggaggggacaAGGagtattggctaaatatttatAAGGTAGTTCACACTGTAATAcctgtgtattttgtataactGTTAATCATAAGATAATCATGTCAgacaatgctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
>TU36366
GTTTGCAAGCGGTCCATATATAAAAGCCTTTCCGGGAGCTCCAGCAAGCGGCAAGCGGAGCCACCTGCACGGTGTAAGTTGCGAGAGGAAACGTCATTCGTGCCCCCCCCAAAGGAAAGCGAAATTAAACCAAAGAAAGCTACATGGAGTAAACCTAAGCCTTCGAAGGGAAGACGGAAACAGCGGGGGCAggattaaagaaagaaaaggaaagaaaagaagaagaagaagaagaagaaaaaaaagccaagTGTCTATCTACCTCGGGATTTccccttttgtttttatgatttattacatgttttaaacgCTAGCAACACTTTGCCTGATGTGCTGTATTCAATGATACAGGAGTAGGATTGAAGCATATTaagtattattgttaataatctaggagtgatatttatttaatgcttttacaTCAGTTTGTGAACGGGGCTCTGGACGCTATGCATCCAACCATCCAAAAGGACACTACTTTCACCAAGATCTTCGTGGGGGGGTTGCCCTACCACACCAACGACGCCTCGCTCCGAAAATACTTCGAGGTGTTTGGGGACATTGAGGAGGCTGTCGTGATCACGGACAGGCAGACCGGGAAATCGCGGGGTTATGGATTCGTGACTATGTCGGAGCGAGGTGCCGCTGAGCGGGCCTGCAAAGATCCCAACCCCATCATTGATGGCAGGAAAGCCAACGTCAACCTGGCTTACCTGGGAGCCAAGCCACGCAGCCTGCAGACAGGCTTGACCATTGGTGTTCAACAGATCCACCCGAGTCTAATCCAGAGGCAGTATGGCTTGCAGCCGTCTGCACGGAGCCAGCCCTGCTCCTGTAGCGTCTGAGGTGTGGACTCTGTGTCCCTGACTGGAggcccccaccccaccctctcCCTCATGAGGGACATCGCCGGCGTCCTCTGAGACACAGGCTGTGGGTCTGGAGAAAGAGTGCTGTGCCGtggagtgtttgtgtgtgtgtctctgtgtgtgtcctgaAAATGGCTAAGGTTGTGTGTTCCGCCCGAGAGAAATTCCCTCCCTCTCCTAGCATGGCTTTGGTTTGCAGTGACAGTGGTGTTGATGGTTTGTTGTGTGACAATcacctgggggtggggggggtggtttGGTGGCGGAGATTGTTCCACTAGCTTGTTGTGTGTGGTTTCCTCACTCGGACATTATCACCTGCCTGATTACACTTATCTGCTAGTTAAACTTTTTAttccttacattttaattacccaATTTCTAGCTATGAGCCTCCTAAGAAGTATACTTATACAgaatatttctgcatttaattgttttaggaGTAGGTAAGGAAATAAGGCTCCTATGCCCTAGCAGTCTGAGCCATTAAATTTTTTACAAGCCTTGCATGATCAGACACCATTTCATCCTGGCTACCTTATTCTGAATAAACTTGCAAAGACTCACCACGTGGAGTTAAACTTAATGTAGCTTTTCTGCttcatttggatttttttttttttataacaggAGCCTGCAAATTGTAATGCCCGAAATGGATCGTGCTGTAATGCAATGGGAGTCTCCTTTCCATGCCTTTTTAGGAGACGGACGCAAAGGCACGTCCGTGTTAATTGGATTATACGGTCCTATGAATTTGctgcacaccaaaaaaaaaaaaagttccttgCCCGAATGTCATGTACTATTAATAGATCTGAGCAACACCGGGATctaaaatgatttgtatttgcatttggcTCCTTGTGCCATTACAGTagcttttgatttgaaaaattTCAGGCGGCTGTTTGCCCGTTCCTCTGGCACGAAGTCCGCACAGAGCCGCACATAGATGGTCTATTTTGCTGTCTGGCTTTTTCCGATTGTCAGTCCCTATAGTCTTCAGAGGAGCTGCACTGAGAGACCGAGGATGGAGGCTTGCGCTCTGAGGCAGTTAAAAATAGACCAACAagaccctcacacacacacctctccaGCAGATAATCCAGATCCTGGACAGTCTCTGACTCTTGGGCGAGATGTACAGCATCACCACTGGGCCCTATATGCTCCTATGATTTTGGTGCTTCCTTGTCAGACTTTTTATTTCACTCGAAAGGCAAGAGACGCGGAGGAAGTCCCCAGCAAGTTCTTGGACTATGGTCGATGAGAGACTGCAGTTAAAAACTAGATTTGCAAGCCGTTACATTTTGGGTGCCCCAGGACTAAGACTGGATGTTCTGGTTCTTTCCAATCATTTTTACAGGCCTTGATTTTTAACCACTGATGCTTGGCCACAACaactcttcccctctctcttggCTAACCCATGTCTTTTTGTTTCCAGGCTAGCCCAGCAGTACATGTACCCCCAGGCCTTCATGCAGCCAGGACTGGTGATCCCCACCCAGATGTCCTCCGTGAACTCTCCCTACCTGGACTACAGCGCCGCCTACGCCCAGTATGCCTCCACTGCCTTCGAGCAGTACCCCTACGCCGCCTCGCCCGGCTTCCTGGGTTACAGCTATCCCACTAACCCGGCCGCCGCCCCCACCACAGTCCAGCAGTCCCTCTCTGCGGGAGCCGCGCCCCCCACAGCTGCCTTTGTCCAGTACCCCCCCCAGCAGGTACACCCCGACCGCATGCAGTGAGAGCTGTCTGGTGGGTTGGGGAATGAAGTATGTAAGAGTGGAAGGGGAgcgaaggaggaggaggaggaggaggaggaggaggaaggaggtgGGGTGCCCAAAGTAGGCTGGGGGAGGATAGGAGGAAGTGTGACTGTTTATTGCACTATGACATGATACAACCCGTGACACCAGGATGATGTTCTGGGCCTGAAGGATACCTGGCCGCATCAAGGGCTTCCAGAAACTCTTTaatacacttattttttatcaaaCAATGGAAACCTGACCCATGTCTGTTGCCAAACGCAGTCCTGACCTGAGCTGTGAGGATCCAAAGTTACTGAAGATCGGAGGAGGAATGGCCAACGTCAAGCTCCACAACTAGGTTCAGTGCAGGAGTAGGAGGGCTGAACTGGAGGCTCAATAAACAATACCTGTGAGCAGAGGAGGAAAACGAGACCCTTTCACCTGTGAAGGgatggaggtttttttttttttttttctccccatttcCCCAGGTTCCGTCAGACGCTGCGGGCTGGGCTCTTAAAGAGTCGGCCTTTCTCAGGAGTGGGAGACCCTAGAGGGGAATTTAAAAGTTACAGTCTCCCTAAAGggacaaaaaagtaatttctggTCTGTTATGAAGAGATCCTAGGATGAGGACAATTCTAGACTTGACATGTTCTTGAAGAAATTAAAGttgtcaaacaaaaataaacctgcaggaatacttattttatttcatgaggCCTTAACTACTATTTCCAGATTCTCATTTTcataccccccctcccccactgtgATTATCATAAGccattctttattattttttaaaggaaaataaacctgaaatgtAGGTAGGACTATCTTTCATTGTCTTTCACATTCATGTTCACTTTTTCTATGTTAAGTTATTGTAGATCAAAGTAGCTCGCATTTGATTTCAATATGCAATCATACAAttggggggggaggggacaAGGagtattggctaaatatttatAAGGTAGTTCACACTGTAATAcctgtgtattttgtataactGTTAATCATAAGATAATCATGTCAgacaatgctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaatgctcatgTACACTTAAATATATTGCTGCAACTTTAAGGTAAATCTACAGTATTTATGTTAACCTATTTAAAGGAAAGAAACCGTTACATTCTtgttcaggatttttttttttttctttttttcttcatcccCATCCTGGGAAATGATCAAAACTCCTTTGAAAGCTTGAACAATGAGATGTTTGATTTTACCAGCAGGACACGATTAAAAGCATGAGTTgcagaaggatttttttttttttttttttttgggtcgTTTCTCCTCTCACTCCACAGCCAGTTGTCTGTCATGCAGGTGTTGGAGcattttcatgttatttatgtaCAATGAAGccataaaatttaaataataaaaaataaattgtaaatattgaaagaaaaaggaacGA

Function

symbol description
rbm38 Predicted to enable RNA binding activity. Predicted to be active in cytosol and nucleus. Is expressed in heart. Orthologous to human RBM38 (RNA binding motif protein 38).

NR:

description
RNA-binding protein 38

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008177 False 2196 mRNA 0.47 4 45023148 45036027
TU36366 True 4108 TUCP 0.45 4 45023148 45036416

Neighbor

gene id symbol gene type direction distance location
AMCG00008178 rae1,LOC105026338 coding upstream 3242 45012765 ~ 45019906 (+)
AMCG00008179 NA coding upstream 10526 44998229 ~ 45012622 (+)
AMCG00008171 NA coding upstream 73942 44945752 ~ 44949206 (+)
AMCG00008170 NA coding upstream 248674 44773068 ~ 44774474 (+)
AMCG00008168 NA coding upstream 253036 44766145 ~ 44770112 (+)
AMCG00008181 NA coding downstream 70997 45107413 ~ 45121480 (+)
AMCG00008188 ttll9 coding downstream 192226 45228642 ~ 45232701 (+)
AMCG00008186 NA coding downstream 203522 45239938 ~ 45242352 (+)
AMCG00008187 NA coding downstream 209537 45245953 ~ 45269832 (+)
AMCG00008193 pigt,LOC106567380 coding downstream 291747 45328163 ~ 45336254 (+)
G28991 NA non-coding upstream 206485 44768677 ~ 44816663 (+)
G28995 NA non-coding upstream 224685 44795924 ~ 44798463 (+)
G28956 NA non-coding upstream 273240 44691541 ~ 44749908 (+)
G28931 col9a3,LOC106571930 non-coding upstream 966540 44053965 ~ 44056608 (+)
G28862 NA non-coding upstream 1127197 43894109 ~ 43895951 (+)
G29148 NA non-coding downstream 317300 45353716 ~ 45354079 (+)
G29153 NA non-coding downstream 341595 45378011 ~ 45378353 (+)
G29223 NA non-coding downstream 503353 45539769 ~ 45542206 (+)
G29271 NA non-coding downstream 689567 45725983 ~ 45734261 (+)
G29291 NA non-coding downstream 851533 45887949 ~ 45888412 (+)
AMCG00008132 NA other upstream 1717618 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 1867076 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 1914906 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 2585920 42413632 ~ 42437228 (+)
G28395 NA other upstream 3029771 41992859 ~ 41993377 (+)
AMCG00008185 NA other downstream 110981 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 304158 45340574 ~ 45343914 (+)
G29183 NA other downstream 404097 45440513 ~ 45441064 (+)
G29353 NA other downstream 1231475 46267891 ~ 46268327 (+)
G29418 NA other downstream 2543797 47580213 ~ 47586235 (+)

Expression


Co-expression Network