AMCG00008179


Basic Information

Item Value
gene id AMCG00008179
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44998229 ~ 45012622 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008179
ATGCACaggctctcctctcctcttctcttctcctGCAGCGCAGCAGCCAGTGCGGTGGCGGCTCTGGGCGCACACGGCTCGCTTCGAGGAGGTGCTATGGGCTGGGAGGGGCGGGAGGCAGCCACTGTTGCCGCTCGACAAAGCCCGAGCCTGGGGAGAGGGGTGGGTGTGTGCTCGGGTATGTCTGAACAGCTCGCTGAGGTGGACAGGCTTCGGGCCTCCCTGTTGTCCAAACCCAGAGTCAGTGACCCGCCGCTGCCCGACGGCGGAGAGATTACCGGCGAGGACGTTTTGTTCCGTATCGAGCACATGGTCCAGTCGGTGGTGGGCAGCCTGTCTGCTGGGGAGGCCCCGGCGCTGGTTATCCGGAACAGAGCCTTGTGGTCAAACATCAGGTTTGACGACAGCATTGGCCTTCAAACCGTCTCAGACAGCACTGTCACTACAGTCAGAAGTGACTGCTCCTCATCTGTGGCAAGATTCGCTTTAACCTTGAAGTTGCTGTCTGTGATTTATAAACTGGTACAGAGCAATACATATGCCACAAAGAGGGACATCTATTACAATGACACCCAGCTGTTCGGATCTCAGAGGACGGTGGATCTTATTGTGGATGACATTTCCTGTATGCTCAGGGTCCCTCGGCGGGGCCTTCATGTGCTTGCAACCTCTAAAGGTTTCATCACAGGTGATTTATGCTACACTGAGGAGGATGGCAGTAGGGTGAACTGTGAGTCCAGCTCTACGCCAATCCTGGTTTCATCCAATGTGTGTGGAATAAAGACTGACCTTAATGGATTAGACATCGTCTCGTCCGCAAAGTTTATCCTGATTGTCGAGAAAGATGCAACGTTCCAGAGGCTACTGGATGATGACTTCTGCACCAAACTGGCTCCGTGTATCATGATAACAGGCAAAGGAGTGCCAGATGTGAACAGCAGGCTTATGGTCCGGAAGCTGTGGGACTCTCTGCTCATCCCTGTGTTTGCGCTGGTGGATGCAGATCCTCACGGAATTGAAATCATGTGTATTTACAAGTATGGATCATTGTCCATGTCATTTGAAGCCCACAATCTGACTGTGCCTGCAGTGATGTGGCTGGGACTCCTGCCCTCTGATATTGAAAGACTGAATGTGCCCAAGGATGCTTTAATCCCATTCACAAAAACAGACCACAGCAAACTCAATAGCCTACAGAAGAGACCCTACATCACCAGCCAACCCCTGTGGGAAAAGGAGATGGAGCTGATGCTGAAATGGAAACTGAAAGCTGAAATCCAGTCCCTGACATCGATAGCCCCAGACTTCCTGACCCGCGTGTACCTTCCCAATAAACTGCACTACGGAGGCTGGATATGATGTCTTACTGCCCCCTTCTGGACGTGTCAGCATTGCATTAATTGTGAAGTGGAAGTTTAATTGTGTTAgttctgctttttgtgtgtgcatttttcatCAAACTGCTGTTACAGCTAATTGCATTGTGTGTTGCTGAGTCTGTTGCCAAGTCTGCATGAGCAAACaagattgcttttatttttgttccctGAAGGAATTCCGGCTAATATGTGTTATTATAAGGCaatcatttacatgttttctcGCAGTGTAATTTAAACTGCACCCAGTTTTCTGGTGGGGGATATGCGTGATTAACTGCAATTTTCTAGTCATTGTGTTCAAGGAATAAAAAggttcaaaataaatgtgtcaaaacACAGTGAGTAACGTCTTTGTGGAGAGTGATTCAAATGAATACAGTGG

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0005694 chromosome cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K10878 SPO11; meiotic recombination protein SPO11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008179 True 1764 mRNA 0.49 14 44998229 45012622

Neighbor

gene id symbol gene type direction distance location
AMCG00008171 NA coding upstream 49023 44945752 ~ 44949206 (+)
AMCG00008170 NA coding upstream 223755 44773068 ~ 44774474 (+)
AMCG00008168 NA coding upstream 228117 44766145 ~ 44770112 (+)
AMCG00008169 ss18l1 coding upstream 237398 44753045 ~ 44760831 (+)
AMCG00008161 lsm14a,lsm14b,LOC105018105 coding upstream 249658 44743630 ~ 44748571 (+)
AMCG00008178 rae1,LOC105026338 coding downstream 143 45012765 ~ 45019906 (+)
AMCG00008181 NA coding downstream 94791 45107413 ~ 45121480 (+)
AMCG00008188 ttll9 coding downstream 216020 45228642 ~ 45232701 (+)
AMCG00008186 NA coding downstream 227316 45239938 ~ 45242352 (+)
AMCG00008187 NA coding downstream 233331 45245953 ~ 45269832 (+)
G28991 NA non-coding upstream 181566 44768677 ~ 44816663 (+)
G28995 NA non-coding upstream 199766 44795924 ~ 44798463 (+)
G28956 NA non-coding upstream 248321 44691541 ~ 44749908 (+)
G28931 col9a3,LOC106571930 non-coding upstream 941621 44053965 ~ 44056608 (+)
G28862 NA non-coding upstream 1102278 43894109 ~ 43895951 (+)
G29148 NA non-coding downstream 341094 45353716 ~ 45354079 (+)
G29153 NA non-coding downstream 365389 45378011 ~ 45378353 (+)
G29223 NA non-coding downstream 527147 45539769 ~ 45542206 (+)
G29271 NA non-coding downstream 713361 45725983 ~ 45734261 (+)
G29291 NA non-coding downstream 875327 45887949 ~ 45888412 (+)
AMCG00008132 NA other upstream 1692699 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 1842157 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 1889987 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 2561001 42413632 ~ 42437228 (+)
G28395 NA other upstream 3004852 41992859 ~ 41993377 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other downstream 10526 45023148 ~ 45036416 (+)
AMCG00008185 NA other downstream 134775 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 327952 45340574 ~ 45343914 (+)
G29183 NA other downstream 427891 45440513 ~ 45441064 (+)
G29353 NA other downstream 1255269 46267891 ~ 46268327 (+)

Expression


Co-expression Network