AMCG00008181


Basic Information

Item Value
gene id AMCG00008181
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45107413 ~ 45121480 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008181
ATGGAGACCAACAAGCAGGAATGTTTAAGTGCTCCAGCTCCCAGCCAGCTAGCGCAGGATTGTCTGGCTCAGCCCACGAGCATCACAGCAACAGCACGAGGGGAAGGCAGGATGCCGAGTGTACAGCCGCCCCTGCCAGCAGTGTACCTCAACCCTCTGAGCTTTCCCTTCTACCCACAGCTGCAGCCCATGCCCAGACAGGACTCCCTGACCATCCACTTGTCAGTTCCTCAGCTGCCAGAGGGCATGGGCCAGGCAGAGAGCAACCAGAGCCTGCCCACCCTAACGCTCAACATCGTCAATGGCGTGCCCATGCTGCAACCAGGTCAGAGGACAGCCAGCGTGGCCCCAGGGAAGCCCAGGTCAGCTGGGAAGCACGTGTGCCAGCACTGTGGCCGTGACTGCCTGAAGCCCAGTGTCCTGGAGAAACACCTGCGCTGCCACACCGGGGAGAGGCCCTACCCCTGTGCCACCTGCGGCATTGCCTTTAAGACACAGAGCAACCTGTACAAGCACAAGCGCACCCAGGCACATGCCCGCCTCTCTTCGGAGTCCGAGCGCAGCGTCAGCATCAGCAACCAGGAGACTTCCCAGGGGTCCACTGACACCTGTCATTCACTGGAGAGCATGGAAAGAACACAGAGTGGAGACTTGGGAAGCTTTGAGAaagaaactgctgctgctgctcctgctgttaCACCTCCAGTAGAGCCCTGTGCCCCAACCACAGATCTTGCTCTTGCGGCACAGGGTAGGACAGTACCCGATACTGGCTGGGCTTTGCACCAGGCTGCTTTGGTCATCCTTGCACCTGTCAATGGAAACCAAGAAAATCTGAGCTCCCTTGCTCAGAGAACAAAGCAGCCATCTGGACCTGATAGCCGACAGAACAGCGAGGATGGAGAAAGGCCGTCACCTCCAACGCCAAACCGACATCTTCCCCTTCAAAGGCAGGAAGCCACCTACTTTTCCAAACAGTGGGACTCGCGAGTTTCGAGTGGCAAGTCCCAGAGCCATGACAGCACGGATTCTGGGTATCTGTCACTTTCAGAAAGTGGTGAGCAGCAGTCTTGGGTTTCCAGCCCTAACAGCAGCCTGCGGGAGCCCAGCATGGAGTCTCTTCTGGAAACCACCATGGAATACCAAGGTGAGGCAACAGCCCCACCTACAGCGAACTGCACAGCCGAGACTGACACCACCCACAGTGGGACCAAACCCAGGACATCGGTGCTGGAGAAGAAGACATTAGAGGAGCGCATCTCCAAGCTGATATCTGACAACGATGCCTTAGTAGATGACAAATGCTTGGAGAACGTGAGACCCAGAAAGACAGTGCTGTCCAAGCAAGGCAGCATCGACCTCCCCATGCCCTACACCTACAAAGACTcgtttcattttgaaattaaagcaaGCAAGAAGACCAGCATTGGTGCAAACTGGCCCAAGCCGGACAGCAGTCCTAAGCCGGCTCCATACAACTCAGTGCCCACCCAACGTTCAACAAGCCTTGAGCGCATACCTGTGACTCGGAGCAGTTCCATGCCTTTTATTGCCAGCTCTTCAGGTTTGGAGAGGAACACCACACAGTGCTTTTATCACAGAGAGACTGCTTTCATAGGAGGGAGGGACAGCTCTGGTCATTTGTACACAGGAGACTTTGCGGCAAGATCTGTCGATCTACAGTCCACACATCACAGATCCCTTGTGAGACAGGTGGCTGTGGACTGCTTGCCAACATCTGAAAGTCATTCTACATCTGTGGAGGAGGGCTGTCAGAGCAGCCTTAGCTCCGAGGGGGACTCCATTGACAGTGTTGGTGAGTCCAGTGGGGGTAAGTGTCGCCGTAAAAAGGCACCAAAGTTCTCCTACAACAAATGGTACATGTACGGAGATGGAACTTTCAGGAAGCTGTACCAGATGGAGAAAGGTTCTGATCAGAATGCCAAGCTAGCTGGTGGAATTGGAAAGGGAAGGAAAACTCCAGTGAGCATGGAGCCAGGAAGCATTTCAGAAGATCAGAGTAGCAGCATGGCTACTCCAGCAACTCCAGTGCTCAGAGTACATAATATTTCAGAGACATCTACAGATCTGAATGCACCTGCACGTGCAGACAAAATTGACATCATTCCATCATCCTGCACTCCCACCAGTGCAGAAATCAATTCAGCAAGTATCGCACTAGATGCCTCAGGCCAATACAAACTTCTAAACCAGAGAGTGCCATGTAATGTGGGCCGATTGGAAACCAACCACGGAAACCAATACTACAAATGTGCCAATCACAACAAAGTGGGCAAGGAACTCAGCCAGATGCTGTCTCCTGCATGCACGGCCCAGCGATACAAACTAACAGAGACTAATCCCAGCATTGTGCCACACAGCATTAGTGTGTTCCCCTCTTACAAATGCCACAGCAGCCCAGCCACTATGGACAGGGGGCTGGTTCATCACATTCTGACGGGGGACAGTGACAACATCTCATCCATACCATCACAACCCCCACCTTCACGGCCATCATCTGCCCAGCAAGAGGGTGTTCAAGCAGGCATTCATTTAAAGAGAAGTGGAGATCAGAAGGTGATGGGACCAGCTGCTAAGCCCACTTTCTCATGCTGCAAATCTGAAGACAAATCAGAAGAGAGAAGACAACTTTGTGGCTCCAAATCAGTGCAGGAAGTGCAGCAAAACCATACTGCAGGTGGGATGTTAAAGAGTTTGAcatgcacttccacttttcAATCAGAGAGGGCAACAGAGAGCGACAGCAGCAGGAGGGCTACACAGTCAGAAACCAGAGGAAGTGGTTCCTCTGATTCCCAGACACTAGTCGGAGAACATGCAATGGAGGCAGAGGCCTGTAAGACACAACAAGTACATGAGAAGACCTCTAGGAAGACTTCAGACCATCTGGATACCATTCGTCCCTCAGCATCCAACACACTGTCTGACGTTCTGTGCCAGGATGCTGTCCCCTGTCCCCCTTCTGGCAGAGAAGTTTGTCTCATTCCCTTACCAGACAGCCATTCTCACCCCCCAGCTGGCTGTGTGCAAAAGGCCTGTCCTATCCTACTGGCTAGTGAGGGCCTCACTCAGGTCACAAGAAGTGGCATCAGGAAGGCTCCAGCTACTCTGGTCTCAGAGAGGAACTTCCTGTCAATGGAGAAGAGCTTCCAGTCTGAGAGCCCCATCCCAGTACAGAGACAGGCACATTGGAGCCCAAGGGGGGCTCCTGCAGTGAAGGGCAATCCCAGTGCTGGCCCCCGTGGCCCACACAGCCTTCCCCTCCCCGAACTGGTTAACACAATGGTGGACAAGAACAAAGCCAATCCAGAGCACTCGGAGGCAGACCCACTTCACCGTAGTCCTCGCTTGAGTTTGGCATGCTCCTCTACCGTCCCCCTGTCAGAGGATGTGGCCCAGGTGGCAGATCCAGAGGGTGTACTCACAATCAACGTCCGGTGCTCCTTGCATGAGGACATGCCTCACGACACGACTTTGGAGGGGCTCCATGAAGTCCCTCTGGGCTCTAGCAGATCCGTGCAGACCGGCCTGGAGGAGACTGACACCAGCAGCAGCGATGACGAGGGTAAGCTGGTCATTGAACTGTAGGGGCAACTACGCACTGCAGAGACACTCACTTCTCCGGCATCAGCCCAGCACTTTCCAGAGCAGCAACGGCACACAGATCCAGGACACGAGTCAACCTGGAATCTGTGATGACATCCCTCAATAACATTGCCGGGTTGCTTGTACAGATACATACGAACTCTTACCCTACAAGGCTTGAATCCCGTGTTTCTTGGGATTAGCTGACTGTTTGTGCAGTTACATTAAATATGAAGCCTGTTGTGCCAAATATCTTCATCGGAACAGAGTGAAACACagactgaaagagtgaaaaacTTTAGACTTGAGGGCTGCAGTCCACTGGGTTTCATAGGTTAACACTTAAAGAAGAAATGGCCATATTTAGGCAAACATTTCTTGAATTGTATAGATAACGGGTCTGAAATGGGTCAGAATGAACAAACTAAGCACTGAGGCCCTTCCTATACCACTTCCAGTAAGTTCACTAACAGACTATTGCTGTAAGTAAGAAGAATATTGTCAGACAAGTGTGACAAATCAGACAAGTGTGACAAAATATATAGCGAGGAAGCCAGACGGTAACTGGGCGTGAGGGCGGATGAGTGGTGGTAACTAAAAATAAGTGGGAGGTGTCTGTACATGCTAAAACTGACAATAGTGTTACTTTTTtgttctgatttgttttgttattagcTGGTGTGTAAAATTTCCTTTATTCTATTTCATTTCAAGTTGTGGTCCtctgaatgtaaaaaatgaGACCATGCATTTGTGGCCTTTCAGGTTTTTTTGGATTGTGGAATGTTTTTCCTATGATGtcaataaagatttttttaaacaaagatgtctatagtaaaataacaaacaaacacggtTTTCATTATCCTGCTTTGGAATATCACTGCCTTTTGTTGTCAGTTTATACCTTCATGGGTTTACGATTCAATTGCCTGTTGGCCAAGATCCACAACATCAAATCTAATCTTACCTTAGCCAGTTCTTTTGAAATTCTGTCAGTGTCCTTTCTTCTAAGCACTAATTGAGTTTCAATGCATTGATTACATGCCAAAGATAAACAAGGTTAATATCAACAATaagtaatataaaacaaaactacaggCCTACCTCTTAAGCCCTAACATTTGGATTAGTGTATTTCTACAAGGGCTGGTCTAG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008181 True 4764 mRNA 0.50 4 45107413 45121480

Neighbor

gene id symbol gene type direction distance location
AMCG00008178 rae1,LOC105026338 coding upstream 87507 45012765 ~ 45019906 (+)
AMCG00008179 NA coding upstream 94791 44998229 ~ 45012622 (+)
AMCG00008171 NA coding upstream 158207 44945752 ~ 44949206 (+)
AMCG00008170 NA coding upstream 332939 44773068 ~ 44774474 (+)
AMCG00008168 NA coding upstream 337301 44766145 ~ 44770112 (+)
AMCG00008188 ttll9 coding downstream 107162 45228642 ~ 45232701 (+)
AMCG00008186 NA coding downstream 118458 45239938 ~ 45242352 (+)
AMCG00008187 NA coding downstream 124473 45245953 ~ 45269832 (+)
AMCG00008193 pigt,LOC106567380 coding downstream 206683 45328163 ~ 45336254 (+)
AMCG00008199 NA coding downstream 254485 45375965 ~ 45399868 (+)
G28991 NA non-coding upstream 290750 44768677 ~ 44816663 (+)
G28995 NA non-coding upstream 308950 44795924 ~ 44798463 (+)
G28956 NA non-coding upstream 357505 44691541 ~ 44749908 (+)
G28931 col9a3,LOC106571930 non-coding upstream 1050805 44053965 ~ 44056608 (+)
G28862 NA non-coding upstream 1211462 43894109 ~ 43895951 (+)
G29148 NA non-coding downstream 232236 45353716 ~ 45354079 (+)
G29153 NA non-coding downstream 256531 45378011 ~ 45378353 (+)
G29223 NA non-coding downstream 418289 45539769 ~ 45542206 (+)
G29271 NA non-coding downstream 604503 45725983 ~ 45734261 (+)
G29291 NA non-coding downstream 766469 45887949 ~ 45888412 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other upstream 70997 45023148 ~ 45036416 (+)
AMCG00008132 NA other upstream 1801883 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 1951341 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 1999171 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 2670185 42413632 ~ 42437228 (+)
AMCG00008185 NA other downstream 25917 45147397 ~ 45171828 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 219094 45340574 ~ 45343914 (+)
G29183 NA other downstream 319033 45440513 ~ 45441064 (+)
G29353 NA other downstream 1146411 46267891 ~ 46268327 (+)
G29418 NA other downstream 2458733 47580213 ~ 47586235 (+)

Expression


Co-expression Network