AMCG00008184


Basic Information

Item Value
gene id AMCG00008184
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45092784 ~ 45095951 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008184
GGTAGGGCTCGGACGCGGAAGTGCAAAGATGGCTGCATCCGTATCGCATCCTAAACCTTGGCATGGGATAATTCATCTGCTTATATTCGTTTGGTATATGTTCACACTTTGTTACAATTGCTCTCAACTAATCTCATCCAGGCATCCGGGCACGCAGTCGTACGGGGGTCGATGGAAGTACTTGACTTTCATCAATCTTGTTTTGCAGACTGTGTTCTTCGGTGTCTGTTTCGTGACTGATGTGACCCAGCTGTTCCCACTGAGGGTTGTCTCGTCCTTCCTCACCAAGCTGCGCAATGTGCTCTTCTCCGTGTTAGCTTTTCCCCTGGGCAGTtttgttttcctgtcctTCTGGTCGATCTATCTCTATGATCGAGAACTGGTCTACCCCAAGCGCCTTGATGACATTATTCCTGTCTGGCTCAACCATGCCCTGcacACTGTGATCCTGCCCTTGGTCCTAGTCCAACTGTGTCTTCAGCCCCACCAGTACCCTTCCAGGAAGAAGGGCATTTTGGGCTTGGCTCTCTTCATTGCCCTCTACCTGGCCTGGGTGCTCTGGATTCACCATGTCTCGGGGATCTGGGTGTACCCCATCCTCGCTCACCTCAGTTCTGTTGGGTTTGTGGTCTTCTTGGCAGCCTCTGCAATCTCCCTGGCACCCCTGTACCTGCTGGGAGAGATGCTTAGCCACCTGCGCTGGGGTGGGGATCTTAATAAGCCTGTTCTGGCACCAGGCTCTTCTGGGTCAAAAGACTCAAAAaggggaaagaagaaaaaaaagatttaggaGTTTCCCTGCATCAAAGCTCAATGCTCAGGGACCAGAGGGGCTCCTCGCCCTTGAATACTGAAAATCAGATGCCATTGCTCTGGGGAACTGAACACTATTCTGGACTGAGACTCTTGCCCTGGATGTGTCTTTTGTTGCTGAAGGACTACAGTCATCGGCCAGAGGAACAGAAACTCCTAACAAACTCAACACTGCAGCAGTTACAATTTaagttgaatatatataatagtacaCACCTCTCCAAGGAAACATTTACACCTTCTGTGTTGaccttttatttcatttctttgtGCACCTGTTATATGAGTGATATAACTGCTTTGATTGTTtacatctttttatatattttttaaccattttaaccaTATGAAGTATAATAGCAGGGTAAATACTCATGgagcacatatatacaaaatcatatgaaaatggaaataataagcactttttaaacatttcaatgtaattaattagTTTGAATTAGAAAAATCAGTTTTTATACTGCAGTAGTCAGAGTCATATTGCACATGGTTTTCTTTAACCTTCTTATctacaaattaacattttaatgtatgtttgcatatataatgtatgtattctgtACATTCACTCActgttaatttatataatgcatTGCAAGGCATAggaattttgaaatgtaaagcaGTTGGTTCACCCAGaccattacattaattttatatttcactttagCCCTCAGTcaatgtgcattttttaataaacagaaatgcaatgtTCTGAAAAATGATATTGTGGTGTGAAGTTGGATTCTCTATTTTAA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008184 True 1589 mRNA 0.42 6 45092784 45095951

Neighbor

gene id symbol gene type direction distance location
AMCG00008182 cstf1 coding downstream 664 45087197 ~ 45092120 (-)
AMCG00008183 NA coding downstream 21813 45062781 ~ 45070971 (-)
AMCG00008180 bmp7b,bmp7,LOC105030895,LOC107601355,LOC106571911,LOC107750885,LOC106566746 coding downstream 94868 44997485 ~ 44997916 (-)
AMCG00008176 LOC103370837,LOC107750885 coding downstream 109039 44971340 ~ 44983745 (-)
AMCG00008175 NA coding downstream 129607 44951398 ~ 44963177 (-)
AMCG00008191 NA coding upstream 137438 45233389 ~ 45234479 (-)
AMCG00008190 NA coding upstream 139108 45235059 ~ 45239415 (-)
AMCG00008189 LOC107550338,LOC103365918,LOC106955159,LOC104947949,LOC107551495 coding upstream 176464 45272415 ~ 45280354 (-)
AMCG00008196 NA coding upstream 199349 45295300 ~ 45302966 (-)
AMCG00008197 LOC106572146 coding upstream 241503 45337454 ~ 45339881 (-)
G29081 NA non-coding downstream 56371 45034445 ~ 45036413 (-)
G28976 NA non-coding downstream 404609 44682437 ~ 44688175 (-)
G28978 NA non-coding downstream 411015 44681425 ~ 44681769 (-)
G28977 cdh4,LOC101161393 non-coding downstream 412742 44679816 ~ 44680042 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding downstream 426207 44666343 ~ 44666577 (-)
G29170 NA non-coding upstream 257856 45353807 ~ 45354086 (-)
G29182 NA non-coding upstream 323639 45419590 ~ 45420462 (-)
G29192 NA non-coding upstream 365828 45461779 ~ 45462530 (-)
G29206 NA non-coding upstream 394056 45490007 ~ 45490890 (-)
G29249 NA non-coding upstream 503608 45599559 ~ 45714037 (-)
G28970 NA other downstream 674588 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 1509371 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 1972620 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 2328130 42761004 ~ 42764654 (-)
AMCG00008104 samd10 other downstream 2691710 42359900 ~ 42401074 (-)
AMCG00008192 NA other upstream 53550 45149501 ~ 45228504 (-)
G29301 NA other upstream 954744 46050695 ~ 46054346 (-)
G29361 NA other upstream 1384995 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 2484188 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 2570691 47666642 ~ 47918462 (-)

Expression


Co-expression Network