AMCG00008185


Basic Information

Item Value
gene id AMCG00008185
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45147397 ~ 45171828 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008185
ATGCAGTTACATGGAGTCGCACAGGCCGCGTCCGCTGGCTTCTCAGCGCCGGTGGAGAGGGCGGGACGGATCAGCCGGGCCCCCCGCGGCCCGTGTGCTCCCTGTGCGCCCCCTGTGCGCCGCCCGGCCCCGCTGAGTCTGCTGTATCCGAGTGAAGGCGGCGCGGTGGGTCTGGCCCGGATGCCTGGACTGGAGGCGCCACGCATGGACAGACTGGCTGCGAGCCCCGCCGGGGGGCCGAGCGGCGGGCTGGAGTGGGCTCGGCCGGCCGGGGCGCCTGCGTGTCCGGGCTGCCAGCTGTCAAAGCCGCGGAGGAGATCCAGGCGCTGCACGTGTTACACTTACACAGACAAGGAGTGCGTCTATTACTGTCATCTGGACATCATCTGGATCAACACTCCGGAGTGA
>TU36420
ctgtgcgctACTGCGCGTCTCCAGCGGGCGGTGCGTTGCGCGTTTATCCACTTCACTGTATATAAAGCCCCCCTCTTATCTCCTTAACAGAAAGGCATGTCGGCTCCCAGTGACTTCAAATGCATCGCAAGGGGACTAGCTGGAAAGAAGCAGTCCGACCCGCAATTATGCTGGATACCTGAGCTATCGAGTTGGATCTAAACGAAATCAAAATGCGCTTTTTTTCTGGGAACTTAACATCTGACTGCTCTCAGTGAATGCTGGGACCTGTCCGGGATTTGGATACAATTTGTCCTATACTTACAGAAGCAGGATTTGTTTGATCTTCTTGTTCTGCATCGGATATTTATCATTGTAAATTtgaatcttatatatatatatattttttttctcctttgtaaCCGTTTTCTCTTCTGGAGTTATTGGGGTATGGCTAGTGCTTCTTTAATGGATCTGGGGCTTTGGTTGCTAATTGGACTAACAGCTGCGTTTGCGAAAGGCCCCGTGCCTGTCCGAAGTGAAGGCGGCGCGGTGGGTCTGGCCCGGATGCCTGGACTGGAGGCGCCACGCATGGACAGACTGGCTGCGAGCCCCGCCGGGGGGCCGAGCGGCGGGCTGGAGTGGGCTCGGCCGGCCGGGGCGCCTGCGTGTCCGGGCTGCCAGCTGTCAAAGCCGCGGAGGAGATCCAGGCGCTGCACGTGTTACACTTACACAGACAAGGAGTGCGTCTATTACTGTCATCTGGACATCATCTGGATCAACACTCCGGAACGAACGGTCCCTTACGGCCTGTCCAGCTACCGAGGCTCAGGTCGAGTCAGGCGCTCTGCTGAGCGTGTGCGGGACAGTGGGCGGACAAGGCTGGGCTCCCAGCGCTGTGTGTGCTCAGACCAGAGAGACCCGCGGTGTGCCAGCTTCTGCCGGGCATGGCAGAGGTCTCCCTGACAGACGTGGGCTGTGACAGATCCTTCTTCCCCGCCAGACACAGACTTCACTGGCCTGGGCGACtccactcctcctccttcagTCTTCACCTTTACTGGTTCACCAGCAGCCTGGCTGGCACGGAGTAGGACACACACCaccagagagacagaaataaaataaaacagggagACACCTGTTTGAACGTCTTGATCTTGTCATGCAGCCAGTCTTTGGAAATGTGTTCCTCAGTGACCTCTGCTGTTGAAATCGTAAGAAATGggtaaaaaacataaaaccccAACAACTGAAAGCATAGCACAGACTGCTTCTGCTATCAAAAGCTCTTCTATAGAAACAGAGACTGGTGGATTTATGAGAAACTGTCTTATGCCTGGATATAGAAGCAGGGGTGGCGTGATTTTGAGCAACTGAGACATCACTTGGGTACATCAGGACAAGACGACAGAAGGAAAAGAAGATGCCATTGTGACTCAGTACAGTGAATTTGATACAATAACTCTGAACAATGTCATGCTGAAGTTTGGTGGACAACTAAAACAATGTCTTCAAAGCAACTTGAGTGGAGAGACTAAAtgctttttccctttttataaaGCTTTTCAGACTGTCTTTCTGGGTTTCCAGACAAGCTTAACCCCTCTTGGCTTTGTCAGAGTCTTATGGACACATGGATGAACAGTCTATTTTTCTACAAAAGGGATTGACTTTACTTGAAGTCTGTGTCTAAGTTTCTTCAGCACCACTTCTCACTTGTCTACTACATGACtatatatactaatatatatatttgtacaaatGTTCATAGCTACAGTTAGATGGGCATACATATAAACCTGAACCTGTGGTATCTCAAACTAATCCTGGAATTCAGTGACTAATCTTCacgtttctttattattattgtattttacagaaataagcCGTGCTTTATAATCAGCACTGACATTAGTACGAATGGCCTGGGCTCTCAGCTTTAGCTAGGGTTGGAAATGAAGATGCCAGACAGAATTTCACAGAGCACTTAGACAAAAGTAAGCTTCTCCTTCCTTGCCATCCAGTTGGATAGCTGCTTAATGGAGGGACTGTGGTAGCAATGCCTGTTCTATCTAATGTgaaaattatatacagtatgtccCAGGTTGTCTCATCTGTGCATATGAAGACTGCTTAGCAACCTAAAACTGTCTACACCATTACACCAAGCAGGACCTgattagtaatatatatatatttccataagGCAAGTTCATTTTGTAGAGGGTAGAAATTCCAGTTTCCTCTAAATGGAAGATCTAAAGTACGTTTTGCAACAGTGTATGTGcgtttatattatacatacatgcacagaaACATAGATGCAACACACAGCTAAATCCCCAAATGTTATTCTTCTATTTAGCTTGAAGTCAAACTAGCCAGCTCAGATTCATATCTACTTTCCCAACACAGTGTGTGCCATTTCACTTTGGTCTGAGGATATAATATTGTGCCTTCATTCTAACTTATGTCTTTAAGTCATACATACTTAGTATACAAGTATACCTTTGCTTACTTGTCAGGCTTGCAAGAATTATCAGATCGGATGGGATTCTTTTCCCACAATGTGCATTTATGAGGACAACTGTACACAATTTGTGAAAGCCCAATGTGTCATTTCCATACTTTCAGGAAGAGTAAGTTTTGCTAGCCGCCGCATGGACAGAATCTGTAAACCATGAGGAGCAGGCAAAGATTTTTATTACAATGAAATGCGATAAGTTTCTATGAACTCTTTCACCGTTGCCGCACCACTAACTACTGAGATACCACTGTCTTGCGACcttctgaaaaaggaaaaacttttATATCCTAaccataacattaaaaacaattgaaagcCTGAAGttgctgtcattttttttaaggtgcGTGGTGCAAAGGAAACCCCACAGAAATTCTGCTGGGTCACTGGAATCGTCCTGTACCGCCTGGTGAAAATAATCAACTAAGACTCATTCAAGCTGCTCTCTGGAGATGCACACTCAAATACATGTTTGTGCCGTGCAGAGTATCCACAGCACCCTGCATTTGCTCTTCTAGAGTCAGTCTGACCAGCAAGCTGAACTACATTCCACGAAACGGTCACATCACAGAACATCAATatcaaccaaaaccaaaaatggTCAAGAGTGCCATAAGGAACCTCAAGTGAAAGGCCAGAGACAAGGATGTTCTGAAGCTGAAATCAACATAAAAGGTGAACATCACTCCTTGAACTCTTGATAAAAATCATTAAACTGGcttgatatgtttttaaatattcctaAACATCAGGCTCAAATGttctaatacaaaaataaaaaagatttgtaaaaatgaaagcaaacacattttacagatttacaaCACAGTGGGAAAACATATTATAAGTCCTAAATCTGCTAACACTTGGAGTCATAAAAGAGTGAGGGTTAGGCTCACTTAGGCTTCAGTTAGTTTACATGGAGCCGTCTTTGCTCCAGTCTTTCAAGGCTCAGGGCTCTTAACCTCTGAATAAATCAAAGACTTAAACCAAGGTGGTAAATCAAGATGCGTTTCTGTGGACTCTTTCCTGCAATCATCCTTTTGAAGTGTGGGAGCAGAACTGAGTGTCCAaaagtccaacatcttgttcccaATTGCTACTGACACCAGCTTCCCCAGGTCAGTGATCGGATTCCTAGGAGCTCATCCACTTTGTGTTTGAGTAACAGTGATCATAACCTGCAAAGTTCAGATGAAGACATAATATTATGTATGAGAttcatttgtgttatttgtagGGAAGGGCAGTGTGGGGAGTGGGTGCGAGAGCCTGGGGGACAGGGTGGCCCCTGTGGAGGCAGAGGTACCCAAGGAGGcagaggagcagcagcaggaggaccGGGGGCTGCCATTGCACTGGTACCTCAAGCATGAACAGGCGAAGACTGCGCCCCACTGCCTGGGCTCCCAGCTCCATGGGCTGGACCACTACTCGACTTACTGCTGACGCCAGGGCCTGAAAACAAGCACAGAAACACGCCATTACCATATGAGGGTTATCAGAGCTCTTTTAAAACCTCTGGGATTCCTCACCCAGCAGAAAGTATTTTAAAGAGCATCActtcaaagagagagagaattaagtTTGTGTACAACAGTCATTACACGGCAAACATGCAGAGTTGGGGTCCTACTAGAAATAAGACACTTCCACCCCAGTCCTTTATGAAGGCAACGATCACGTAACAGCTTTCAAACACTCCTCCAAAGCCAGGCCGCCtttcttacacacacaaacacactgcagtgcaCATGGAAAACAACGTGCAACAGGGTTCCTGCTAGGCTGATATTTGGCGACACCGTTGACACGCAAGAACTTTCACCTCCGATCACGTGGAAAAGTCCGGAGGCATCTTTACTGACTGGCGaccatttaattacaatttattgccctgggcTTTGCTGcccttttattgtttaattacaggAGGTATGTACCAGCACACAACCATAAGAGTTACATTAAATGAAAGATCTCTAGATTATAGTTTTAAGCACAGAAGATTGTCTGTCATGTCGGAATGTTCCCTGAGCCTGCCCGCCCCCCCGGACAGATCCAGAAAGAGTGAGATTAACCGGTTTTGTGTCGGGGTTTTGTTTGGctagaaaaaaaattaataactaTCGGTAAAGCCAACCTGATTCTCACAGTGACTAAGAGAGTTACATATAATTGTATGGTATGTATAGTTAAGCTAGGTGTGCCACTTCTATGAGTGCTATTCGACTCTCACGCTCCCAGATGTTTTGCTGTCTGCTTCTTGCTCTCAGTCTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008185 False 408 mRNA 0.69 3 45147397 45151336
TU36420 True 4791 TUCP 0.45 5 45149429 45171828

Neighbor

gene id symbol gene type direction distance location
AMCG00008181 NA coding upstream 25917 45107413 ~ 45121480 (+)
AMCG00008178 rae1,LOC105026338 coding upstream 127491 45012765 ~ 45019906 (+)
AMCG00008179 NA coding upstream 134775 44998229 ~ 45012622 (+)
AMCG00008171 NA coding upstream 198191 44945752 ~ 44949206 (+)
AMCG00008170 NA coding upstream 372923 44773068 ~ 44774474 (+)
AMCG00008188 ttll9 coding downstream 56814 45228642 ~ 45232701 (+)
AMCG00008186 NA coding downstream 68110 45239938 ~ 45242352 (+)
AMCG00008187 NA coding downstream 74125 45245953 ~ 45269832 (+)
AMCG00008193 pigt,LOC106567380 coding downstream 156335 45328163 ~ 45336254 (+)
AMCG00008199 NA coding downstream 204137 45375965 ~ 45399868 (+)
G28991 NA non-coding upstream 330734 44768677 ~ 44816663 (+)
G28995 NA non-coding upstream 348934 44795924 ~ 44798463 (+)
G28956 NA non-coding upstream 397489 44691541 ~ 44749908 (+)
G28931 col9a3,LOC106571930 non-coding upstream 1090789 44053965 ~ 44056608 (+)
G28862 NA non-coding upstream 1251446 43894109 ~ 43895951 (+)
G29148 NA non-coding downstream 181888 45353716 ~ 45354079 (+)
G29153 NA non-coding downstream 206183 45378011 ~ 45378353 (+)
G29223 NA non-coding downstream 367941 45539769 ~ 45542206 (+)
G29271 NA non-coding downstream 554155 45725983 ~ 45734261 (+)
G29291 NA non-coding downstream 716121 45887949 ~ 45888412 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other upstream 110981 45023148 ~ 45036416 (+)
AMCG00008132 NA other upstream 1841867 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 1991325 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 2039155 43105713 ~ 43108242 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other upstream 2710169 42413632 ~ 42437228 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 168746 45340574 ~ 45343914 (+)
G29183 NA other downstream 268685 45440513 ~ 45441064 (+)
G29353 NA other downstream 1096063 46267891 ~ 46268327 (+)
G29418 NA other downstream 2408385 47580213 ~ 47586235 (+)
G29421 NA other downstream 2423276 47595104 ~ 47595686 (+)

Expression


Co-expression Network