AMCG00008186


Basic Information

Item Value
gene id AMCG00008186
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45239938 ~ 45242352 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008186
ATGCCAGACCCGAACTTGATCGCCACCCAGAGCATTAGCAGGATATTTAGCCGCGCTGTGCCTCTCAGCTCTCCACCCTGCATGGAAATGGCCAGGCCCGGGTCATGGTGGCTGCAGCAGCAGTCCCAGCAGAGGAAACAACCTGAGCTGGCCATCCCCAGGAACCTCAGCTATGTGTCCAAGCATGGGTTCACAGTCCGGTTGGCAGATGCATTAGGGAAGGATCTAGGCAGCCAACAGAAACCTGTGAGGATCCGTCCGCCAGCACCCATTGAGCCTGTTTCTAGAGAGCCTGTGACAGTCTGGGGACCCTCTTGCGAGCCCAAGCCAAAGTCCATAATTCGGAGGAGAGCACGATCACTGCCTAGCTCTCCTGAGCGACGAAAGGGCTCCTATAAGGAAAGAGGGAGCCAGCGGGTTCGGTTTGTGGACTCTCTGGGGCTGGAGTTAGCCGAGGTGAAGGTCTTCAAGGCAGCGGAAGACCCCTCGGTGCCTCTGCATGTCCTTTCCAGGCTTTTGCTGAACTCAGAGCTGGCCACAGGCAGGCACCTCGAAATCCCCCTCCATTATCTGCAGCCAGACTTTGCCCAGCAGCCGGGAGACCAGGCAGATTTCCACGACAGGCTGTCCCGCCAGAATGTGTGCCTGGAGAGGGTCGTGTGCTTTGAGCTGGGCATCACAGGCTCTGTGTGGGTCCGTAACCTGGCCTTTGAAAAAGAGGTTAGTGTGCGCTACTCCTTCACAGACTGGAAGAGCAGCTCAGACACCAAGGCATGCTGGGAGTCTAGTGTTAGTGGAGGCTCGGTCACAACTGGGCCAGGTTTGGACCTGTTTCGGTTCCGGCTCCCAGTGCCTCCCTTCATCCTGCTGCCCGGTGCCACATTGGAGTTTGCAATCTGCTACCATGTCAGAGGGGCTGAGTTCTGGGACAACAATGATGGCCACAACTACAGTCTGACGTGCCACAGCTACAAACTCACCGTCCCCAAGGAGTGTGAAGGCAGCTTGGTACACTTCATCTAAGTGACAACTGAGGGGTCTAGCACCTCTGTCTCCCGACACAAATGGGGAAAACAACAGGCAAAAGCACCTTTTtgcaaactaaatacattttatttttattttttattaataagacatattttgaaatatgaacCTTTTTGCACTATGTCTCTCTCGGTAGCAGTCTGCTTTGAATACAATTGTCTCACATCTGACACTGGAACACAACAATACTAATTACTACTGTAAGTAAAATGTGGattgcactttaaataaaaacactgtaacCATTctgtcacattattattattttagtctaaggctgggattaaatcaaaactttgacccacccactaatcaaaaactacagaactgtactcagttgctttgcatttttcatcTAATCACAAATGTAACCTCTATgttgtacaggtttgtagtttgctattagcaggtgtgacaaagttttgatttaatccagccctaagtatgttttgcacattatTAACCAAAAAAGTAATTCCTTATATAAACTAAGATTTTACCTGATTTTGTCTGTACTGCTCCACAAGGTTATTAGAAACCAGTTATGGTAACAAATTGTTTGTTGTTGGAAGACCTTCttccaatatatattaaaaaaaggaaagataatACAAAAG

Function

GO: NA

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008186 True 1664 mRNA 0.48 2 45239938 45242352

Neighbor

gene id symbol gene type direction distance location
AMCG00008188 ttll9 coding upstream 7237 45228642 ~ 45232701 (+)
AMCG00008181 NA coding upstream 118458 45107413 ~ 45121480 (+)
AMCG00008178 rae1,LOC105026338 coding upstream 220032 45012765 ~ 45019906 (+)
AMCG00008179 NA coding upstream 227316 44998229 ~ 45012622 (+)
AMCG00008171 NA coding upstream 290732 44945752 ~ 44949206 (+)
AMCG00008187 NA coding downstream 3601 45245953 ~ 45269832 (+)
AMCG00008193 pigt,LOC106567380 coding downstream 85811 45328163 ~ 45336254 (+)
AMCG00008199 NA coding downstream 133613 45375965 ~ 45399868 (+)
AMCG00008200 NA coding downstream 158517 45400869 ~ 45408463 (+)
AMCG00008204 NA coding downstream 173925 45416277 ~ 45423427 (+)
G28991 NA non-coding upstream 423275 44768677 ~ 44816663 (+)
G28995 NA non-coding upstream 441475 44795924 ~ 44798463 (+)
G28956 NA non-coding upstream 490030 44691541 ~ 44749908 (+)
G28931 col9a3,LOC106571930 non-coding upstream 1183330 44053965 ~ 44056608 (+)
G28862 NA non-coding upstream 1343987 43894109 ~ 43895951 (+)
G29148 NA non-coding downstream 111364 45353716 ~ 45354079 (+)
G29153 NA non-coding downstream 135659 45378011 ~ 45378353 (+)
G29223 NA non-coding downstream 297417 45539769 ~ 45542206 (+)
G29271 NA non-coding downstream 483631 45725983 ~ 45734261 (+)
G29291 NA non-coding downstream 645597 45887949 ~ 45888412 (+)
AMCG00008185 NA other upstream 68110 45147397 ~ 45171828 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other upstream 203522 45023148 ~ 45036416 (+)
AMCG00008132 NA other upstream 1934408 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 2083866 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 2131696 43105713 ~ 43108242 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 98222 45340574 ~ 45343914 (+)
G29183 NA other downstream 198161 45440513 ~ 45441064 (+)
G29353 NA other downstream 1025539 46267891 ~ 46268327 (+)
G29418 NA other downstream 2337861 47580213 ~ 47586235 (+)
G29421 NA other downstream 2352752 47595104 ~ 47595686 (+)

Expression


Co-expression Network