AMCG00008187


Basic Information

Item Value
gene id AMCG00008187
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45245953 ~ 45269832 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008187
GCGGGAACACGCGGCTCGCTCCGGACTCGGGGTTTTCATTGACGGCTATTGACGTCTGGATCGGTACAATACACCGCAACGCCAGCATCTCATTCACGGAGCTGTGTGATCCCTCAAATCAGAAGGAAGCGGGCCGCTTGAAACTCCAAGGAGCTcccTGTCCTTTTTACTCAGGGTGGAAGgtttttgtttggaCTTCTAATACAAACAAACTGATTTTGGCTGGTGAAAATGCCACCCCGCCAGGATCAACAGCTTGAGAAGTGCATTGACGAAGCCCTGAAGAAAAATGAGTTCCAGGGTTTGGAGGAGTTGCTGGCGGATGAAAGCATCGAAGGCACAACTCAGAAATGTTCCAAACAGTTGTTAAATAAACTGGACAAACTCCTAAACAGGGAGCTTGATAAAAAGTGTGTGAAAAATGCCTCTCAGTTGCTGTCTTGCCTCTATAAGTTTGGAAAGTCCCTGAGCATCCAGGGAAAGACTGCTTTTCCCATGTTATTGATTCACATGGTGCAGTGGTATGAGAAAGCCAGGGAGATGTGGGTAGAAGCCGGGCAACTGAAAAACGAAGCACTGATGAATCTCGCAGAAGATTTTTTTGACTCTTTGATGGTTGTTCATGAAAACAGCAATGAGgGAAAAAGACAAGTGGGAGAAGCCTTCCTTCATCACACTGGGCAGTTAACTGGAGATACCAGAGTGCATATAACCATCCAACAAGAGGCGGCAAGAAAACTGAACCAGATTCTGGATGAAATCCCACAAGAgctcaaaaaacaaatgttgatgTCTGAAGAGGACTTAGGTGTCATGAATATTTTAGCCAAAAGAATAATGGATGGTGGAGATTATGACCTGCAGATAGCGGTGACCGAGGCCCTGTGCAGGATGACTACAGAGAAACACAGGCACCAGCTGGCAGACCAGTGGTTTACCATGGAGTTTGTAGCCAGTGCCTTCAAAGGGATTAAGGATTCTAAATTTGAAACGGACTGCAGAAAGTTTCTCAACCTAGTAAATGGCATGCAAGGAGACAAGAGAAGAGTGTACTCTTACCCTTGCCTGGAAGTGTTTCTGGACAAACATGAGTTGCTAATGCCAGCCGACGATAAACTGGAAGAGTTCTGGATAGATTTCAACCTGGGCAGCCAAAgcatttctttttatgtttCCCCCACTGATGAAGAGGAGGAGAATCAGTGGGACACTGTTTGCATTCCCGAGAATGAAGTCCTGAACTACACAGTTGAAGaaaagaatgggaaaaaaatattaaaggtgTACTTTAAGCAGACATTAAATGTCAGCGACAGACAAGGGTCCCAGATCCATATCCATTTCAGTGCATCACTGGACATCCATGGAGCTGTCAGACATGTGTATggagatgaaaaaaacaaaGAATTTGCTGGAAAGTGTCGAAGCTCAGTTGTGAAAACCACTGTCCAGATTATCTTTGATGAAGGTGGCTCTCAgGTCCTAGTTCCTGAGAGTCAGGTCTCAGTCGCTCTCAGTTTGGATGAAAAGCCCAGAGGGAAGGCCAAGAAAAGCAGTCAGCTGCCCACACTTTCAAGTGTGCCTGCAGAGATACTTCAGGCAGCCAGAGTCACTCAAGCAGCACCACACCCCGTCCAGGCCAGTACCCCCGTCAGAAGGAAGGTCTCTGAGGCCAGCTCCATTGTGTCCAGCAGTGGGGGGAGGTGGACAACGGCGAGCCCTGTGTCAAAGGCAATGGTGTCTGCAACTCCAGCACTGAAGGGCAAAGTTAAACCAACCCTAGAGCTGGTCGGCTCctcaaaaaaaaacagaagctatACCATCAGCGAACTGATGGCCACAACATACAGTACATCTGTAGTGAGTGTGCAGTCTGGCAGAGAAGCAGGTGTCCTGGGACGAGACAAGGcaaATGATCCGAAAAATATTGTACCTGACTCCCAGCCTGTTATGAGAAAAGACAGACGCTTATTGCCTGGCCTTCTAAGCAGTGTTTCAAGGGTGAAAAGTGCTGTGTCCCGAAAGCGGTACGCTGTGTCTGAGGGGGTATCTACAGTTCTAAACCGCCAAGAACGAACGTCTTCCACGGTGGATGTCCTTAATCAAGGTCAGTCCGAGCAGCCAGTCTTGTCTTCAGCGCAACGCAGTCGGGCAAATGACAAAGTGCTACAAGAGCAGGTCACTGAGAAATTGGAAAAGTTCCTTAAAGAGAAAATCCAGAGAGCAAGATCTCCTGAAGGAACCGGGGCTCTGGGACAGGAGGAAAAGCCTGCACAGCGAGGGACCAGGCGGAGAGGGAAGACAGCTCAGCCACAGGAGGCGAAAGAGCACCTCAGTACAGAAATACCCAACAGACCTGCCCCAGCAAGCCCAGCCAAGCCCCTGAACAGAACACTACCTGTGTCAGACAACAGCCCATACACCTTTGGCAAGGACTATTCTTTCTGCAGGGAAGTGTGTCCACAGAAAGTACAGGGGCGTCCCATGGCAGCTCCCAACAGTGAGGCCCAACAGAGGACTTTGCCCGTAGCAAAAGGGCCTGTCGAAAAAATGATGAGAACGATTTCCAGGAAGTACACAGCTCAGAGAGGGCCCAGTTTAGACACATGTGCCCAGAACAGGGATGACATTTACAGCTTCAGAGATGAGTCAGCAGTGAGTTTCGAGCCCGGACGCCGTGCTGTGAAGAAGCACCTATTCAGTGACACTGAACCTGATTCCAGGCCAGAGGACAGCTGCACAAACATCAGCTGGCTCAGGGACTCCAGCAGGAGACCCAAGCCAAAAGTGGCAGACTACAGCAGGCGGCGTGCTGGCAAACCGACCCCGAACCCCGACAGCCATGTGTCACCTGATTTGTCCTCACCTCTTCCAAAACCATCGAAGAAGAAAGCCAGTTCCACAAAGaagagggaaagaaagcaGACTTCACCGAAGGAACAGAGAGCCACGACGTCTGGGCGACCAAAGAGAACAGCAGCACAGAAGCAGACTTACAAAGACCCCTCCGGATCAGACAGCTCGGAAAATTCACTGGACGAGGAGCTGCCCCTTAGAAAGCCCAAACAGGTGCAACCCAACAGTAAAGAAGAGGAGACTGTGGGGGCTCCTCCCCCAGTTGAAAAGAGGAGTAGAGGACAGAAAAACCCTGCTGCGGACACATGGGCCTCTGATTTCTCCCCTCCGGCCTCTCCGCCTCCAACAGTGGAGAAGATGAGATGCGCGGAGATGAAGTCAGTAGTGTCGCCGCGGTCCCCCGTGTCTGCCCTATGCAATCTCTCGGTGTCCTTCACTGACTCTCCCTCTCCGCCACCGCAGCTCCTGGAGCCCCTCCAGGGAATCCTGTCCCAATCGTTCTATAAGGCAGACCAGAAGAGTCTGAAGGCCCCTTTCCTCCTGTCACTCAGTCCAGTGACTAAGCTTTCCAACCTAGCTATACATGAGCATGACAAGGCCTCTCCAGCATTGACCCTGATCTCAGAGCCCCCTTTGACCTCAACTGCAATTGAGATGTGTGTAGGCGAGGGGACGGAAAATGGGCAGATGGCAGAGGAGGAGGCCGAAGCggtggaggagagggaggacagCCAAGACGTGCTGGTGTCCTTTGACAAAGAGTCAGTCCTCTCTGTGGGAACACAAAACAGGTCATCGGGGAAATCTCTCAGTGGCAAGaaaaCACCAAGATATGGTACAACTGCAACACAGAAAGTCCACATGTCAGGCTTTTCAGGCACCCCCTCTGATACCCTGAAGCGGCTCCATGCCAACCAGGGGACAAGCAGCTCTGAAGACGAGGACGAAGAGGAAAGCAATTGGAAAGAGCAGGAGCCTAGAATGACGCCCAGAAAACTCTTCAAACCAAGCCGGCCAGACTGGCGGGCTGAGATGGCCCCCATGGCTGCCACTGTGAAGCAGCCTCCACACAGAGAGGAGAAGGCCAGCAGCTgtgaggaggcagaggaggaggaatggGGAGAACGAGTCGAAGTCCCAAGCAGGTCCAAAAACCTCTTCCGAAAGCCAGGACTTGATGGGACAGGAGATAACGACATCGAGGTGCACTCCAGCATCTCCTCCCACGTGGTGTCCACACTGGACCTCAACTCCTGGGAATCCAGCACAGAGCAGGACATGACAATGATGTGTCAGAAGTTCAGTACAGAGCTGAAGAGGAAATTCCAGAATCGCTCCAGGAAGATGGATTCTTACACCAAGCAGTCACTGAAGTCTATCCAGCAGCATGTGTCCTCAGTCCGAGGGCAGGTCCAGCAGTACAGGTTCAACAGACTGGAGAGTTTCAGGGGCACAATCATAGAGGAGCTCAATGACTTCGAAAAGGATGttttagctttaaaaaatatggaGAAAGAACTAACCGATTTTTGGAAAAAACAGTCCCAGACATTGAGTACGTATCAGAAGAAAGAGCAAAGGAGAATTGAGAACCTCAAGAGCTCGTTTGAACAGAATGCATGTCACAGCCTAGAGTACGAAGAGAGACTCGTCACCACAGAGGTGAGTGGTGGACAAGGACTTCAGAAGGGAGCCACCATAAGATGA

Function

GO: NA

KEGG:

id description
K19529 SYCP2; synaptonemal complex protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008187 True 4563 mRNA 0.50 39 45245953 45269832

Neighbor

gene id symbol gene type direction distance location
AMCG00008186 NA coding upstream 3601 45239938 ~ 45242352 (+)
AMCG00008188 ttll9 coding upstream 13252 45228642 ~ 45232701 (+)
AMCG00008181 NA coding upstream 124473 45107413 ~ 45121480 (+)
AMCG00008178 rae1,LOC105026338 coding upstream 226047 45012765 ~ 45019906 (+)
AMCG00008179 NA coding upstream 233331 44998229 ~ 45012622 (+)
AMCG00008193 pigt,LOC106567380 coding downstream 58331 45328163 ~ 45336254 (+)
AMCG00008199 NA coding downstream 106133 45375965 ~ 45399868 (+)
AMCG00008200 NA coding downstream 131037 45400869 ~ 45408463 (+)
AMCG00008204 NA coding downstream 146445 45416277 ~ 45423427 (+)
AMCG00008205 NA coding downstream 174106 45443938 ~ 45468459 (+)
G28991 NA non-coding upstream 429290 44768677 ~ 44816663 (+)
G28995 NA non-coding upstream 447490 44795924 ~ 44798463 (+)
G28956 NA non-coding upstream 496045 44691541 ~ 44749908 (+)
G28931 col9a3,LOC106571930 non-coding upstream 1189345 44053965 ~ 44056608 (+)
G28862 NA non-coding upstream 1350002 43894109 ~ 43895951 (+)
G29148 NA non-coding downstream 83884 45353716 ~ 45354079 (+)
G29153 NA non-coding downstream 108179 45378011 ~ 45378353 (+)
G29223 NA non-coding downstream 269937 45539769 ~ 45542206 (+)
G29271 NA non-coding downstream 456151 45725983 ~ 45734261 (+)
G29291 NA non-coding downstream 618117 45887949 ~ 45888412 (+)
AMCG00008185 NA other upstream 74125 45147397 ~ 45171828 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other upstream 209537 45023148 ~ 45036416 (+)
AMCG00008132 NA other upstream 1940423 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 2089881 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 2137711 43105713 ~ 43108242 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 70742 45340574 ~ 45343914 (+)
G29183 NA other downstream 170681 45440513 ~ 45441064 (+)
G29353 NA other downstream 998059 46267891 ~ 46268327 (+)
G29418 NA other downstream 2310381 47580213 ~ 47586235 (+)
G29421 NA other downstream 2325272 47595104 ~ 47595686 (+)

Expression


Co-expression Network