AMCG00008188 (ttll9)


Basic Information

Item Value
gene id AMCG00008188
gene name ttll9
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45228642 ~ 45232701 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008188
ATGTCCAAAAATAAGaacACGGGAAATAAGGGTCCATACAGCTATcaaaagaggagagagggGGAGGCGAGGAGCTGCGTCCGCTACAGGTGCGCCCTGACCAACACCATCCAGGACGTGCTGCGCCAGAGACCGGGCTGGCTGGAGGTGAAAGACGAGGGCGAGTGGGATTTCCACTGGTGCGACATCGGCTGGCTGCGGGAAAACTTCGACCACACCTACATGGAGGAGCATGTGCGAATATGTCACTTTCGCAATCACTACGAGCTGACCCGTAAGAACCTGATGGTGAAGAACCTTAAGAGGCACCGCAAGATGCTGGAGCGCGAGGCGGGCAAGCTGGAGGCGTCCAAGTGTGACTTTTTCCCACGCACCTTCGAGCTGCCCAGCGAGTACCACCTCTTTGTGGAGGAGTTCAAGCGCAGCCCTGGCAGTGTCTGGATCATGAAGCCGGTGGCCAGATCACAAGGAAAAGGGATCTTTCTGTTCCGCAAACTCAAGGACATCATGGACTGGAAGAAGGATGGTAGCCGGTCCGATGAGCAGAGGGACGAGATGGTGGAGAGTTACGTGGCTCAGCGGTACATTGAAGATCCTTACCTCATCAGCGGCCGGAAGTTTGACTTAAGAGTTTATGTTCTAGTATCATCGtATGTCCCTCTGAAGGCTTGGCTGTACCGAGACGGCTTTGCTCGCTTCTCCAACACTCGCTTCTCTCTCAGCAGCATCGATGATCATTCTTCCTCTATCCTTAACTCTAATCTCCATGCAGACGTCCATCTCACAAATGTAGCCATACAGAAAACAGCACCAGATTACGATCCCGAGAAGGCAAGTGGCTGTAAGTGGCAGATGCAGCAGCTGCGGCGGTTCCTGTGTGCCCGGCACGGCTCAGAGGCGGTGGAGACGCTGTTCAGACAGATCGACAACATCTTCGTGCGCAGCCTGCAGAGCGTGCAGAAGGTCATCATCAACGACAAGCACTGCTTCGAGCTGTACGGCTATGACATCCTGCTGGACCACAACCTCAAACCGTGGCTGATAGAAGTGAAcgcctctccctccctcacagcCAGCAGTCAGGAGGACTACGAGCTGAAGAGCCGTCTGCTGGAGGACACCCTGCACATCGTGGACATGGAGGGCAGACTCAGCGGGAGGGAGAAAAGGGTCGGGGGCTTTGACCTCATGTGGAACGACGGCCCGGTATACAGAGAGGATGTCAACCTGGAGGCCCTGGGCAATTCCTGCTTTACTGCCAACACGCATTTAGGCTGCGTCAATGACAGGAACAAGCAGCTCCGACAGCTCCTGAAGCCTCTCCCTGGACAGAAGAAAATCTGA

Function

symbol description
ttll9 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cilium. Orthologous to human TTLL9 (tubulin tyrosine ligase like 9).

NR:

description
PREDICTED: probable tubulin polyglutamylase TTLL9 isoform X1

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process

KEGG:

id description
K16603 TTLL9; tubulin polyglutamylase TTLL9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008188 True 1344 mRNA 0.55 14 45228642 45232701

Neighbor

gene id symbol gene type direction distance location
AMCG00008181 NA coding upstream 107162 45107413 ~ 45121480 (+)
AMCG00008178 rae1,LOC105026338 coding upstream 208736 45012765 ~ 45019906 (+)
AMCG00008179 NA coding upstream 216020 44998229 ~ 45012622 (+)
AMCG00008171 NA coding upstream 279436 44945752 ~ 44949206 (+)
AMCG00008170 NA coding upstream 454168 44773068 ~ 44774474 (+)
AMCG00008186 NA coding downstream 7237 45239938 ~ 45242352 (+)
AMCG00008187 NA coding downstream 13252 45245953 ~ 45269832 (+)
AMCG00008193 pigt,LOC106567380 coding downstream 95462 45328163 ~ 45336254 (+)
AMCG00008199 NA coding downstream 143264 45375965 ~ 45399868 (+)
AMCG00008200 NA coding downstream 168168 45400869 ~ 45408463 (+)
G28991 NA non-coding upstream 411979 44768677 ~ 44816663 (+)
G28995 NA non-coding upstream 430179 44795924 ~ 44798463 (+)
G28956 NA non-coding upstream 478734 44691541 ~ 44749908 (+)
G28931 col9a3,LOC106571930 non-coding upstream 1172034 44053965 ~ 44056608 (+)
G28862 NA non-coding upstream 1332691 43894109 ~ 43895951 (+)
G29148 NA non-coding downstream 121015 45353716 ~ 45354079 (+)
G29153 NA non-coding downstream 145310 45378011 ~ 45378353 (+)
G29223 NA non-coding downstream 307068 45539769 ~ 45542206 (+)
G29271 NA non-coding downstream 493282 45725983 ~ 45734261 (+)
G29291 NA non-coding downstream 655248 45887949 ~ 45888412 (+)
AMCG00008185 NA other upstream 56814 45147397 ~ 45171828 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other upstream 192226 45023148 ~ 45036416 (+)
AMCG00008132 NA other upstream 1923112 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 2072570 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 2120400 43105713 ~ 43108242 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other downstream 107873 45340574 ~ 45343914 (+)
G29183 NA other downstream 207812 45440513 ~ 45441064 (+)
G29353 NA other downstream 1035190 46267891 ~ 46268327 (+)
G29418 NA other downstream 2347512 47580213 ~ 47586235 (+)
G29421 NA other downstream 2362403 47595104 ~ 47595686 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_02503590_02509554 TTLL9 coding CI01000021 null 2502568 ~ 2509554 (-)