AMCG00008190


Basic Information

Item Value
gene id AMCG00008190
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45235059 ~ 45239415 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008190
CAAACCTCCAGCGACAGCAGACAAATGGATGAATACTAGCACAGCAGATCATTGCCTTGTCTGATTGATTGAGTAAAACACGGAGACTGTTAACTGCAAATAcggttttatttgtatttctacgTATGCTTTGTGAATTTATGTTTCAATAATGACAATGTATGGCAAGCAAAGCATGATCTGTTGTTTTGATGAGGGGATTACATGCGGACATTATTGACTCCCTTAAAATTTGAATGTATATCTGCTGAGATTGTGATTGTGGTAAGACCTAATCCTGGTGTGAAATAAAACCTATTCAACCTATATTTTATCTGCAGAATAGATTGAGCACTGCAGTGTATCTACCCAGTTCACTAAGTGCGCATTTCGCTTTTAGCAAAAATGGGTCATTTCTTCCACCGTATTACAATTGTGTTGTATCTGATGAGGACTATAGACTTGAATCTTTAGCAAACCTAACCCCCTGGCTCGCCGGGTAGTGAAGTTGAGCTTGTGGGGTGCAGATAGTTAGCTACCGTTTCTGTGATTTGACTATGGGACCCATCCTGCAAGAGCGACCAGCGACAGCTGCCCTCAAGAAGGGATCTTCCAAAGAGCGAATAAGGGCTAAATGCTCCGGGAACAGCGGATCAGTGAGCAGttcCAAGAAAGGGAAGGCAAGCCAGAACCACAGAGCCCAGAAGAAGGCAGGTGTGCAGCCCAAGCATGCATCTCCTCGCCAGGGCAAGGACCCAGCTCAGCCAACAGAGCGGGGTTCTCAACGCAGAGGGAACAGAACCAAGCCTGGGAATTTGTCCATCACTGAGGGCGCCCCTCTGCCTGCTTCAGACAAACCTCAGGGTCCTGGCGAAGTAGACATGAAGGCTTCACTTTGCCTCTCTGCAGGCCGAGGTAGGAGGATTGAGACCCTGCCACAGCCCCAGAGTGAGGGGGACAAAGACGGAGGCTCCTCTGGTCCAGGCAAAAACAGACGCATGCTGTCCCTACCCCTGGTGCCCCCTCACTCAGATGCATACTCCGAGCCGAAGGAGGGGCAGGTCCCCAGCCTAGAGACACTCAGGCTGTATGAGGGAGTGGAAGATGATGCCGACAGTGCCAGTGACTTATCTGACTCAGAGAGGCTCCCAGTGCTCCCCTCACCCTGCACCCCGCCTCAGCTCAACCTCCGGGCCGAGGTCATCAACCCCAGCGACTTCCACCCCTACTTCCCCGGCCCTCGGGGAGGGAGCCATGCCAACTACAGCTACCCAGACTTTCTTCCTCCCCCCTTCAATACCTGGAGTCTGCGTCAGCTGGCCCTGTTCCTCAACACGGAGGGCAGGGGGGCCCCTCGGCCGAAGCCTGTGGGGCAGCTGGAGAGGTACCTGGAGCGCCTCCTGCAACTTGAGTGGCTCCAGATCCAAACCACTCAGGCGGAGAATGGCAAGCCTTCAGCCCCTGTGTCTGCCAGCCGCCAAAGGCCTCACACTGCTCCCCCTGGGCACCTCAGCCTTCCCAAGAGCCTCCGTCAGTGCCAGCGTGCCTTTCCCCTGGCCTTCCTTTCCTGCTTAGGGAACCCCTCTGCCTCCCAGCTCTCCCGGCCCGCCTGCCCTCACTGCCGCATCCACTACCCTTTCTGTAATGGCACCTGCCGCTCCTATGCTTACCAGCGCCACTCCCGGCTTAGCCCCTTGCTGGAGCGCAGAGTGGGGTCCGCTGTTCCTCAGAAGAGGAGCAGCAGTGAGTCCCGGGTGGCCTCTTCTGATGCTGGGGCTCGGGTTCAGAAACCAGGGAGCCCCTCGCCCAGCGGGAACAGCCACCTGAAACGCATGCAGGCTGTGGGGAACATCCGCAATCCCCTGCCAAGCCCAGGTCCCAGTATCAAGCCCCAGACTGCACAGAGAAACAACTGTGCAGGGCCTGGGGTCCGAATTGGCAGGCAGAGGGGTTCCATGGTGGTCAAGGGTGTGGATTCAGAGAAAAAAGGGTCTTCTTGTGGGACCAGTGGCAGTGTGTGGGATGTCAGCCCAATAAGGAGGAGTGGGAATGAGAGGCAGAGGGCAGCAGTGACGGCAGTGGCGAGCTGGGATTCGAAACAAAGCTGTATCTTACCATCCAAAGAGCCGCCCCCTGTCTCCAAGGGTCCAGCTAAATCTAATGGGAAAGTGAAACATGTTCAGTTTATTACTAAATAACTGCATCCACCTGCATCTAGACACGTCTTTTCCCTAATCAGAATGCAGTATGAATGCTTTAGGGTTTTACAAATCTCTCTATATTGCAATATCTTGCCAATAAACTTtgtgtaaatatacatgtaaatatacatttgtcagAATCATATTGTGGCACTGTGAAGCATCATGGGCGTGAAGgagctacattttaaatgtgtaagaaTAAGTATTCAGGACCATCATAATCATttttgagagagaaagggaCTGAATAACAATAACTGGAATCAATAGCTGAATAATGCTGCCTTGAATTATTTTGGGTTTACAAGAAATTTTGCAGAATCTGTCTGCTGATTAGAAGAGAATACAGGATCAGATATTTTGCATATTAGTCTGcagtaaatgttatatatatttgttaagcTGCATAATTTGTCAGCGTTTATATTCCTCTGATATCCTTTTGTATTTAGATTGCTTGTTTAGGAACTTAtcatttaatgtttcatttatccatttgtttttctagcaTAAGCCAAGATACatagtattttattcaataaaatctGTTTCTCTAGGCCAGTATATCTCTTACATCCTCATAGGATAAAATGAAATCATTTTCTTGTCAATGCAATCTTTTTGTCagtaaaaaatgcatatataatatatgtttgtatttcttatacagaaaagattaatatattttttagtgttCTCCACCATATATTTATACTTGCATATTGTAGATAGGATGCAAAGACATTTAAGCTGACCTGGTTGTATTGTGCATTTATGAATTTTCATATAATTGTCTATGATATGTGGTAAACGTTTTTAACTGGAAgatttaagcaaaaaaaaaatatatatatatattattatcttTAATGTGTTACATATTTAAGTCATGTTGATATAATGGAAAGCTGCACTACTTgtcaagtttctaactttcaaATTTTGGTTAGGAAGGTTAAAACCATCAATTGTTAAATgaacatatacatgcatatatacattttagtgtACTATGAAGTgtttctttgggggggggggtggtcagAAAAAATGTTAACTATAACGTTCAATGCAATATTGGATAATATGTCTTGAACATGTTTGtcctttgtatgtattttggttGGATTTCTGTGctatatttgtttccttttatggTCTTTGTCGTGTCTGTATTTATTGAAGactgcattatttttcactatttttgttttttactattTTGAAAAATCCAAAAGAAGTTAGCAtggtatatttatttcatacaatTGCAATGTCCAATGCCAGTTAATGCCAGTGACACTTAAGAATTTATATCAAATTAATCAGTGCTTATATTAGAAATGAAATGATGGATATCACTAGTTTCATGATTCAGGTATGAACAGAATTAACAAATCCATATGTTACCTCAAAAGTCTGCag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008190 True 3608 mRNA 0.45 4 45235059 45239415

Neighbor

gene id symbol gene type direction distance location
AMCG00008191 NA coding downstream 580 45233389 ~ 45234479 (-)
AMCG00008184 NA coding downstream 139108 45092784 ~ 45095951 (-)
AMCG00008182 cstf1 coding downstream 142939 45087197 ~ 45092120 (-)
AMCG00008183 NA coding downstream 164088 45062781 ~ 45070971 (-)
AMCG00008180 bmp7b,bmp7,LOC105030895,LOC107601355,LOC106571911,LOC107750885,LOC106566746 coding downstream 237143 44997485 ~ 44997916 (-)
AMCG00008189 LOC107550338,LOC103365918,LOC106955159,LOC104947949,LOC107551495 coding upstream 33000 45272415 ~ 45280354 (-)
AMCG00008196 NA coding upstream 55885 45295300 ~ 45302966 (-)
AMCG00008197 LOC106572146 coding upstream 98039 45337454 ~ 45339881 (-)
AMCG00008195 NA coding upstream 104764 45344179 ~ 45350087 (-)
AMCG00008202 LOC102194700 coding upstream 169848 45409263 ~ 45414813 (-)
G29081 NA non-coding downstream 198646 45034445 ~ 45036413 (-)
G28976 NA non-coding downstream 546884 44682437 ~ 44688175 (-)
G28978 NA non-coding downstream 553290 44681425 ~ 44681769 (-)
G28977 cdh4,LOC101161393 non-coding downstream 555017 44679816 ~ 44680042 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding downstream 568482 44666343 ~ 44666577 (-)
G29170 NA non-coding upstream 114392 45353807 ~ 45354086 (-)
G29182 NA non-coding upstream 180175 45419590 ~ 45420462 (-)
G29192 NA non-coding upstream 222364 45461779 ~ 45462530 (-)
G29206 NA non-coding upstream 250592 45490007 ~ 45490890 (-)
G29249 NA non-coding upstream 360144 45599559 ~ 45714037 (-)
AMCG00008192 NA other downstream 6555 45149501 ~ 45228504 (-)
G28970 NA other downstream 816863 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 1651646 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 2114895 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 2470405 42761004 ~ 42764654 (-)
G29301 NA other upstream 811280 46050695 ~ 46054346 (-)
G29361 NA other upstream 1241531 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 2340724 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 2427227 47666642 ~ 47918462 (-)
G29544 LOC100846954 other upstream 2884510 48123925 ~ 48124682 (-)

Expression


Co-expression Network