AMCG00008194 (acot8,LOC107730625,LOC107670930,LOC107722006)


Basic Information

Item Value
gene id AMCG00008194
gene name acot8,LOC107730625,LOC107670930,LOC107722006
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45340574 ~ 45343914 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008194
AGTTGACAGTGGTGACAACATGGCCGCCGCCGTGCTCGGAGAGGGGCTGCCGGCGAACTCCGCCTCTGCCGGGCCGGGCGCCGCGGTCAGTGTCCGGTGTGTGGGAGACACAGACGGGTCAGCCGCTGTCACTCCGGACCTCCGGAGCATCTTGGTTACCAGCGTTTTGAACCTGGAGAAGCTGGACGCGGACCTGTACAGGGGAAAGCACCACTGGGTTCCCCGGACGCAGCGGCTGTTTGGCGGCCAGATCATTGGCCAGGCTCTGGTGGCGGCGGCTAATTCGGTCAGCGAGACCGTCTTCGCCCACTCGCTGCACTGCTACTTCGTACGAGCAGGGGACCCCAAGGTTCCTGTCCTGTACCAGGTGGACCGGACGCGGGATGGCAGGAGCTTCTGTGTTCGCTCGGTCAAAGCCATTCAGCACGGGCAGCCCATTCTCATTTGCCAGGCCTCCTTTCACCTGCTCCAGCCCAGCCCCATGCAGCACCAGTTCACCATGCCCACCGTGCCTCCTCCCGAGGAGCTGCTGACGGTGGAGGAGCTCATCCAGAAATACCTCAGAGACCCGAACCTGGCAGAGAAGTCCAAGCAAGGCCTGAATTATATCCTGGCTGAGGAGGTGCCAATTGAAATCAAGCCGGTGAACCCCCCAGATTTTTACCGGAGAATTGTCATGGAGCCCAAAAAGCTGTTCTGGGTTCGAGCCCGCGGACATATCGGCGAGGGCGATATGAAGCTGCACTGCTGCGTTGCGGCCTACGTGTCAGATTACTCGTTCCTGGGCACGGCGCTGTTGCCCTACCCAGAATCCCGAGTGCATTTCTCCGCCTCTCTGGACCATGCCATGTGGTTCCACAGCACCTTCCGGGCCGACGAATGGATGCTGTATGAGTGTGAGAGTCCCTGGGCAGGGGGCAGCAGGGGGCTGGTCCAGGGCAGACTGTGGAGGCAGGATGGGGTCCTGGCAGCATCCTGCGCACAGGAGGGGGTCCTGCGAGTCAAACTGGCGGCCAATCAGAGTAAGCTGTAGGGAAGAGGCCATTCCTGACACCACGGAGGCAAACTTGGAAGCAGTGTGTGGCCAGGAGAGCAAAAAAGTCTGGGTGCTGTGTGGTGAACCCTGATGCATGCCTTCCCTCACGACAgaggaaattacatttatttaggaAATGGAAATTTGAAAAGTAAGACCAAGATGGAAAATCGGGTAACACGGTTGTCTAATTCTGCCATCTAGTGGCAGATCTGtcaattaaaagtataattctCCTAAAGGCtattactaattactaattCAGTGCTTATACTGAAACATAGTTCTCAGGCGTTATACTCTGTAAGGGCAtaaccattattattacattatattctTTCTGATACCCCTGCACTATGAAAGAAGTAGTGTGAATTTGGaaatagtttgttttgaatgtttcaaGTTAAGGCTGAGAAGCACAGATATGTAACAGACCAAAATAGTTCTCTCTTAATGTTGAAGGTGAATTATCTAGTTTACTATATGTCAGGTATGTAGAAAAGAAGTGAATTCTGGTTATTCCTTTGTGAATTGTCCATTTTCCATACATTGAAGTTCTCTAAGGATTACTTGGCAgaaaaatgttggaaaaatagtttaaaaagaaatggcaTAGTAAGTTAAGGGTAAATTACCATCTAATGGTACTGTAGGAACAATATTGTCATCTAGGTTAGCTGTGCTGAAACTGAGAGCTTGCAATCATTAATTTCAGACTTCTTGGATCACAGAGTTGCTTAGCAAAGCCTATCTATGGTCACACAATATTTGCTTGCTTTAATCAAATGTtctatgtaaattatattttcataagaAACCCATGACCATTACACTAATGTCTAGGATAATTCTGAGCTTCATGAACGGGCATGTTACAGCCACCTCCATTGGCTACTTAGTTCCTTTTGTCTGCACTAATTGTAGTTTTGAGGAGAATGTCtgcacagaaaatgtttttgcatttaccAGTGAATCCTGCTGAACAGAAGACAGAAGTTacttcattattaaaatatattaagaggAAGAGAAACTAGTTTTTTgaagaaataagaacataacataTCTGAGAATCTCAAACTCTCTAAAGATTGGCTACAGGAAATTAGAGATGTCACTACAGTGCCAGAAATTATTTTTGGAGGGCTG
>TU36476
GCCGCCGCCGTGCTCGGAGAGGGGCTGCCGGCGAACTCCGCCTCTGCCGGGCCGGGCGCCGCGGTCAGTGTCCGGTGTGTGGGAGACACAGACGGGTCAGCCGCTGTCACTCCGGACCTCCGGAGCATCTTGGTTACCAGCGTTTTGAACCTGGAGAAGCTGGACGCGGACCTGTACAGGCGAGGGCGATATGAAGCTGCACTGCTGCGTTGCGGCCTACGTGTCAGATTACTCGTTCCTGGGCACGGCGCTGTTGCCCTACCCAGAATCCCGAGTGCATTTCTCCGCCTCTCTGGACCATGCCATGTGGTTCCACAGCACCTTCCGGGCCGACGAATGGATGCTGTATGAGTGTGAGAGTCCCTGGGCAGGGGGCAGCAGGGGGCTGGTCCAGGGCAGACTGTGGAGGCAGGATGGGGTCCTGGCAGCATCCTGCGCACAGGAGGGGGTCCTGCGAGTCAAACTGGCGGCCAATCAGAGTAAGCTGTAGGGAAGAGGCCATTCCTGACACCACGGAGGCAAACTTGGAAGCAGTGTGTGGCCAGGAGAGCAAAAAAGTCTGGGTGCTGTGTGGTGAACCCTGATGCATGCCTTCCCTCACGACAgaggaaattacatttatttaggaAATGGAAATTTGAAAAGTAAGACCAAGATGGAAAATCGGGTAACACGGTTGTCTAATTCTGCCATCTAGTGGCAGATCTGtcaattaaaagtataattctCCTAAAGGCtattactaattactaattCAGTGCTTATACTGAAACATAGTTCTCAGGCGTTATACTCTGTAAGGGCAtaaccattattattacattatattctTTCTGATACCCCTGCACTATGAAAGAAGTAGTGTGAATTTGGaaatagtttgttttgaatgtttcaaGTTAAGGCTGAGAAGCACAGATATGTAACAGACCAAAATAGTTCTCTCTTAATGTTGAAGGTGAATTATCTAGTTTACTATATGTCAGGTATGTAGAAAAGAAGTGAATTCTGGTTATTCCTTTGTGAATTGTCCATTTTCCATACATTGAAGTTCTCTAAGGATTACTTGGCAgaaaaatgttggaaaaatagtttaaaaagaaatggcaTAGTAAGTTAAGGGTAAATTACCATCTAATGGTACTGTAGGAACAATATTGTCATCTAGGTTAGCTGTGCTGAAACTGAGAGCTTGCAATCATTAATTTCAGACTTCTTGGATCACAGAGTTGCTTAGCAAAGCCTATCTATGGTCACACAATATTTGCTTGCTTTAATCAAATGTtctatgtaaattatattttcataagaAACCCATGACCATTACACTAATGTCTAGGATAATTCTGAGCTTCATGAACGGGCATGTTACAGCCACCTCCATTGGCTACTTAGTTCCTTTTGTCTGCACTAATTGTAGTTTTGAGGAGAATGTCtgcacagaaaatgtttttgcatttaccAGTGAATCCTGCTGAACAGAAGACAGAAGTTacttcattattaaaatatattaagaggAAGAGAAACTAGTTTTTTgaagaaataagaacataacataTCTGAGAATCTCAAACTCTCTAAAGATTGGCTACAGGAAATTAGAGATGTCACTACAGTGCCAGAAATTATTTTTGGAGGGCTGCAGAAGAgatgtaatgttattttctgtacaaataaaattactttGTATC

Function

symbol description
acot8 Predicted to enable acyl-CoA hydrolase activity. Predicted to be involved in acyl-CoA metabolic process and fatty acid catabolic process. Predicted to be active in peroxisomal matrix. Orthologous to human ACOT8 (acyl-CoA thioesterase 8).

NR:

description
PREDICTED: acyl-coenzyme A thioesterase 8-like

GO:

id name namespace
GO:0006637 acyl-CoA metabolic process biological_process
GO:0047617 acyl-CoA hydrolase activity molecular_function

KEGG:

id description
K11992 ACOT8, PTE; acyl-CoA thioesterase 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008194 True 2188 mRNA 0.48 6 45340574 45343865
TU36476 False 1694 TUCP 0.44 3 45340596 45343914

Neighbor

gene id symbol gene type direction distance location
AMCG00008193 pigt,LOC106567380 coding upstream 4320 45328163 ~ 45336254 (+)
AMCG00008187 NA coding upstream 70742 45245953 ~ 45269832 (+)
AMCG00008186 NA coding upstream 98222 45239938 ~ 45242352 (+)
AMCG00008188 ttll9 coding upstream 107873 45228642 ~ 45232701 (+)
AMCG00008181 NA coding upstream 219094 45107413 ~ 45121480 (+)
AMCG00008199 NA coding downstream 32051 45375965 ~ 45399868 (+)
AMCG00008200 NA coding downstream 56955 45400869 ~ 45408463 (+)
AMCG00008204 NA coding downstream 72363 45416277 ~ 45423427 (+)
AMCG00008205 NA coding downstream 100024 45443938 ~ 45468459 (+)
AMCG00008198 NA coding downstream 140716 45484630 ~ 45486967 (+)
G28991 NA non-coding upstream 523911 44768677 ~ 44816663 (+)
G28995 NA non-coding upstream 542111 44795924 ~ 44798463 (+)
G28956 NA non-coding upstream 590666 44691541 ~ 44749908 (+)
G28931 col9a3,LOC106571930 non-coding upstream 1283966 44053965 ~ 44056608 (+)
G28862 NA non-coding upstream 1444623 43894109 ~ 43895951 (+)
G29148 NA non-coding downstream 9802 45353716 ~ 45354079 (+)
G29153 NA non-coding downstream 34097 45378011 ~ 45378353 (+)
G29223 NA non-coding downstream 195855 45539769 ~ 45542206 (+)
G29271 NA non-coding downstream 382069 45725983 ~ 45734261 (+)
G29291 NA non-coding downstream 544035 45887949 ~ 45888412 (+)
AMCG00008185 NA other upstream 168746 45147397 ~ 45171828 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other upstream 304158 45023148 ~ 45036416 (+)
AMCG00008132 NA other upstream 2035044 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 2184502 43144805 ~ 43156072 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other upstream 2232332 43105713 ~ 43108242 (+)
G29183 NA other downstream 96599 45440513 ~ 45441064 (+)
G29353 NA other downstream 923977 46267891 ~ 46268327 (+)
G29418 NA other downstream 2236299 47580213 ~ 47586235 (+)
G29421 NA other downstream 2251190 47595104 ~ 47595686 (+)
AMCG00008232 ddx27 other downstream 2279038 47622952 ~ 47671421 (+)

Expression


Co-expression Network