AMCG00008195


Basic Information

Item Value
gene id AMCG00008195
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45344179 ~ 45350087 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008195
CGCACTGCCTCCCGAATTCCGATCCCGATTGATTGTGTCCAACTTCCACTCGGTCCTGGCCGGAGTGCAGTGACCGATGCGCCGAGTCTGGGATCGCTAGCAGCCGAGCAGAACCACTTCCCGGGAGAGTGGCCTCGGAGAATGTGTGGCTGCAAGGATGGCCTCTAAGCTCCTGGACAGACTGAAGCGCACGCTGTTCAAGGACGGGGTGGCCACGGCGGAGCTGAGCGGCACGGAGGACTTTCCCGAGAGCTCGGAGTTGGACGATGACACAGACTGCATCTCGTCCCGGCTCAGTGGCACCCTCAGCTTTGAGGGGGAGAAGGGGCTCGAGACAGAGGACCCCGGGGAGGCTTCGGACCTGGACAGCGACTCGGACTTCCTGGGAGAGTCCACGGAGAATGGGATGTGCAGCACAGATGCCAGCCCTGTGGGTCCGCCAGTCAGCCAATCACTGCTGACACGGCAGCTGCAGGACAGCTGGCGTAGCTCTCGGTGCCGGACCGTTGTGGAGAAGCTGGTGTTTGAAGTGACCGATGCCAGTGTGGTGCAGGAAGGGACCTCCAAATACGTGCTCTACACTATCCATGTGATCCGTTCAGGAGCGTTCGACAAGACCCCGGCCATCATCACCCGCCGCTACACGGACTTCGAACGTCTGCATGGCCGGCTGCGGCGTTGCTATGCGGACGAGATGGAGGGTGTGTCGTTCCCTCGCAAGAAGCTTCGCAGGAACTTCGTGGCGGAGACCATCGCCAAGCGCAGCCGAGCCTTCGAGCAGTACCTCACGCACTTGCACTCGCTGGGGGAGCTGCGGCGGGCGCGCATCTTCCTCGAGTTCTTCTACCTGGGTGACCTGAGGATGGGGCAGAACCTGCTTCGGGCCGGGCAGTACCAGGAGGCCTTAGGATCTTTGCTAAATGCCTTGAGGCTGCAGGAGAAACTGAGCGGGCAGCAGCAACATCATCTTCAACAGCCACAAAGAGGTCATTGGTTTTTCACCCTGTCGGCCCTGGCTGCCTGTTTTCAGGAGTTAGAtcagctggaggaggcccaggaGAACTGCGAACGAGCGCTGCAAGATCTAGCACCTTCCCAGGATACTGCACATCCGAAGCAGTTCCACCCAGCCTTCATCCCACTCCTGCAGGCCAATGTCAGGCTCTCCTGGAAGATCTCTAAGGACAAGCGCAGGTGGGAGGCCCTCCTGCAGGAGATGAGGGACTCTGGGGTGGATATCGGTAACCAGCCCAGCCTCAAAGAGTACCTGGTGAAGGAGGTGCTGGAGGACAGCGATGGAGGGAGCAGACACAAGGCCAAAGAGGAGCTGGCCTAGGCCACAAGAGCGCTTTAGAAACATCTAATATTTGGACACCTTGGAAACGAGAAAGGAAAACTTGTTTGTGATTTCAAAATACTTCggatattacttttttttttttcatgttacaCAAATGGGTCAAAAAATCGTACGGCTGCTTTTTGAAATTGTAGGTAAAAGGcgaatttaatatttattaaaatgactgaTTTGTGCTCTTGGAAGAAGGGATAGCTGACTAAATAAATGGGGGAAATGCATTAACTAAGGGATGAAAAGGGAATTTCAATTACAAACTAAATGTACATGACATTCAGACCTGGGAACATGTACTCtgagtagtgtgtgtgttttctattaGTATTGGGAATACTACCATGCATTAAGGAACTAATATTCAGTAATGGAATACCTAGTCTGTGAACATAGTGATTGAAAAGCACGAGATACGATTGTGTGCACATTTGATTAAGGTGTTTACGTTTCTGTCCATTTCATTTGACACTAAATTACACTTGTGATGTATTGAGGCCTTTTGTTACTGAAGAAGAAACTATTCTCCACTAAATGGATAAATGAGGGATTTTCACTCCATCTACCAACTGAAGTGCACGGCCTCATCTGTGACGATGATCCAAAAAACGTACTTTTAACTGGGACTTGATTCTGATTGCTGACCAATTTCTCACTGCAGTTGGAGTTGACAAATGTTATGGAAAAATGTGGAGTCAAACCTagttgtcttatttatttttgtgtgcatgtttattatttgtatttgtttggtttgcagTTCAAGTAGTAGGGTTGTTACTGattagtaaaacacatttattttacattatatacaagAATGGGAATTGGCTCTTTGCTCCACCTATAGTCACTAATCTGCATTTTGTCCTCATAATCTGAAGTTTTATATTGAACATTAtagttattaattatatttcatgaaACCTGTTATCTTTTGCTATTTCCAAGAACTAAGAATAAGGGAAAGCATACcttgctttttttgttatagATTCACATACTGTAGTTAAATATAATACACCTAGTGCTGACCTCtttgtaaagcatttaaaaaaagaaatgcaatgagCTGTATATCAATACTGAAGTCTGTAACAGCATTGAAGAGCAACGTTAAATGAATGAGGGTGAATTTTTCTCAGTGGCAATGTAAGAAGTGCCTTGGACTGGACAATGTCgcccttctctttctttctgcagTAAAAGCAGTATTTAACACTTAGTCCTCATTTTCACaagtgatatatttttaaaaattttatCTTGCAACTTCACTTAACAGCAGATGGTATTCACACAGTCTTTTTGTGTACATGTAAGATTTCTATGAAATTGAACTTTGTATAATGTTTACACTGTttggattatattttaatggaaataaatcttTAAGAGTTATTCAAGTAtgaatttaaaagcaatgcTTTAGCTCTGTTATTGGTTTCATGAAAAGAtgtataacaaattaaaactaacCAGCTCCAGTGAAGCATTTAC

Function

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17932 SNX21; sorting nexin-21

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008195 True 2854 mRNA 0.46 4 45344179 45350087

Neighbor

gene id symbol gene type direction distance location
AMCG00008197 LOC106572146 coding downstream 4298 45337454 ~ 45339881 (-)
AMCG00008196 NA coding downstream 41213 45295300 ~ 45302966 (-)
AMCG00008189 LOC107550338,LOC103365918,LOC106955159,LOC104947949,LOC107551495 coding downstream 63825 45272415 ~ 45280354 (-)
AMCG00008190 NA coding downstream 104764 45235059 ~ 45239415 (-)
AMCG00008191 NA coding downstream 109700 45233389 ~ 45234479 (-)
AMCG00008202 LOC102194700 coding upstream 59176 45409263 ~ 45414813 (-)
AMCG00008201 LOC106582837 coding upstream 71678 45421765 ~ 45435361 (-)
AMCG00008203 NA coding upstream 117096 45467183 ~ 45484122 (-)
AMCG00008209 ift52,LOC107730620 coding upstream 148019 45498106 ~ 45503562 (-)
AMCG00008206 sgk2a,sgk2,LOC107564803 coding upstream 153955 45504042 ~ 45518710 (-)
G29081 NA non-coding downstream 307766 45034445 ~ 45036413 (-)
G28976 NA non-coding downstream 656004 44682437 ~ 44688175 (-)
G28978 NA non-coding downstream 662410 44681425 ~ 44681769 (-)
G28977 cdh4,LOC101161393 non-coding downstream 664137 44679816 ~ 44680042 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding downstream 677602 44666343 ~ 44666577 (-)
G29170 NA non-coding upstream 3720 45353807 ~ 45354086 (-)
G29182 NA non-coding upstream 69503 45419590 ~ 45420462 (-)
G29192 NA non-coding upstream 111692 45461779 ~ 45462530 (-)
G29206 NA non-coding upstream 139920 45490007 ~ 45490890 (-)
G29249 NA non-coding upstream 249472 45599559 ~ 45714037 (-)
AMCG00008192 NA other downstream 115675 45149501 ~ 45228504 (-)
G28970 NA other downstream 925983 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 1760766 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 2224015 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 2579525 42761004 ~ 42764654 (-)
G29301 NA other upstream 700608 46050695 ~ 46054346 (-)
G29361 NA other upstream 1130859 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 2230052 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 2316555 47666642 ~ 47918462 (-)
G29544 LOC100846954 other upstream 2773838 48123925 ~ 48124682 (-)

Expression


Co-expression Network