AMCG00008197 (LOC106572146)


Basic Information

Item Value
gene id AMCG00008197
gene name LOC106572146
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45337454 ~ 45339881 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008197
GCCTCTCCCCCCCGCTCACTTTTCCCAACTTTAATCGTGAGATCCCGGGCAGTCCCGGGAcacagcgcagcgcagcgcagcgcaggAGACATGAGGGCGGCGGGGATCTGCGTGCTGGCGATAGTGCTCCTCACACTGGCCCAATGGACCACTGCGAGCCCCGCTCCTGGACGCAACTCTACAGTGATCAAGGCCGGCCACTGTCCTCGGCGGCTCCAGGTCGTGCCGTCGAAgcgggtgtgcgtgtgtgacgAGGACTGTCCCGGGGAGGACAAATGCTGCGTCTTTGACTGTGGGGCCGTCTGCGTGCCGCCAGCTTTCACAAAGCCCGGGATCTGCCCACGGAGGAGACGAGGATCGGGGATGTGCGCCGAGTTCTGTGCCGATGACAACGAGTGCCCCAAGGACGAGAAATGTTGCAGTAACGGCTGTGGGCATGAGTGTATAGCGCCATACACAGTGAAGCCAGGAAGATGCACGCGCCCTAAGGGGACTCCCATGTGTGCTGAGTTCTGTTACCACGATGGCGAGTGTCCCGCGGAGCAGAAATGCTGTCGGACGACCTGCGGCCATGCCTGCAGCGAACCCTGCGGATGATGCCCTCCCGGAGAtgggctgttttttttatacttgaaccctatttttattttttttataaccacCACCAAGATACTCCTTCCCTGTGtgcaatgttttctgttttgttttgtactatTTGGTTTATGTGTAAtcgtgaccctgtactggataaAGCGGTTATTGAAAGAGGAtggatgtttgtttgtaatgtgatgtataaaataacatttggaaaTACATATACAACAAAACACAGCGTTACACTTACTGCGGAAATGTAGTATGCACATTTGCCTTATTAGAAAAAGCTGTGCATCGCTGGAATgagtgcattttttatttttcttctgcatgCATGCTccacaacattttatttggggggAGCAGTCCAGAAGATGACTTATTTCACTGCAGGCAGC

Function

NR:

description
Antileukoproteinase precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008197 True 998 mRNA 0.53 4 45337454 45339881

Neighbor

gene id symbol gene type direction distance location
AMCG00008196 NA coding downstream 34488 45295300 ~ 45302966 (-)
AMCG00008189 LOC107550338,LOC103365918,LOC106955159,LOC104947949,LOC107551495 coding downstream 57100 45272415 ~ 45280354 (-)
AMCG00008190 NA coding downstream 98039 45235059 ~ 45239415 (-)
AMCG00008191 NA coding downstream 102975 45233389 ~ 45234479 (-)
AMCG00008184 NA coding downstream 241503 45092784 ~ 45095951 (-)
AMCG00008195 NA coding upstream 4298 45344179 ~ 45350087 (-)
AMCG00008202 LOC102194700 coding upstream 69382 45409263 ~ 45414813 (-)
AMCG00008201 LOC106582837 coding upstream 81884 45421765 ~ 45435361 (-)
AMCG00008203 NA coding upstream 127302 45467183 ~ 45484122 (-)
AMCG00008209 ift52,LOC107730620 coding upstream 158225 45498106 ~ 45503562 (-)
G29081 NA non-coding downstream 301041 45034445 ~ 45036413 (-)
G28976 NA non-coding downstream 649279 44682437 ~ 44688175 (-)
G28978 NA non-coding downstream 655685 44681425 ~ 44681769 (-)
G28977 cdh4,LOC101161393 non-coding downstream 657412 44679816 ~ 44680042 (-)
G28974 LOC101069589,LOC106525190,LOC104949831 non-coding downstream 670877 44666343 ~ 44666577 (-)
G29170 NA non-coding upstream 13926 45353807 ~ 45354086 (-)
G29182 NA non-coding upstream 79709 45419590 ~ 45420462 (-)
G29192 NA non-coding upstream 121898 45461779 ~ 45462530 (-)
G29206 NA non-coding upstream 150126 45490007 ~ 45490890 (-)
G29249 NA non-coding upstream 259678 45599559 ~ 45714037 (-)
AMCG00008192 NA other downstream 108950 45149501 ~ 45228504 (-)
G28970 NA other downstream 919258 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 1754041 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 2217290 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 2572800 42761004 ~ 42764654 (-)
G29301 NA other upstream 710814 46050695 ~ 46054346 (-)
G29361 NA other upstream 1141065 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 2240258 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 2326761 47666642 ~ 47918462 (-)
G29544 LOC100846954 other upstream 2784044 48123925 ~ 48124682 (-)

Expression


Co-expression Network