AMCG00008199


Basic Information

Item Value
gene id AMCG00008199
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45375965 ~ 45399868 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008199
GGCAGCCGAAGTCCAGGCTGGCTTCCCCCAGCACTGAGGCCTGGCGCTGGGGACACGGGGGCGCCTCCCGACCACCAAGGAGAAGGAGGGGAAGAAGCCTCTGTCATTGCACAGGGAAAGAGTGACAGCACAAGGGGGTGGGGTAAAGGGGTGAATTTGATCTTTCAGACTGAAGACACAATGAACAAGTGGTGGCTCTTGGGTCTCCTGGCTCTCTGCCCCCTGACCTTGTGTACAAACCCTGGTGTCACTGGGCGACTGACACAGAAGGGACTGGAGTATGGCCGGCAGATTGGAATGGCTGTTCTGCAGAAGAGACTCCAATCTATTAAGATTCCAGACATTTCAGGGAAAGTAAAGGTGAAGCATGCTGGGAAGGTGAAGTACAGCGTGTCTGGGATGAGAATTGTGAATCTAGGTCTCCCACAATCCAGTCTGGGGCTGGTGCCCAGCTCAGGGCTCAAACTATCCATCGGCAATGCCTTCATCAAAATAAAAGGCAGATGGCGAGTGAAATACCTGAGAGTCATAAAAGACAGCGGCTCCTTTGACCTGTCTGTCAGCGGGCTGAGCATTTCAGCAGGCATGGGCGTGTCCAGGGACGGGACAGGGCATCCGGCGGTCAGCAGTGCCAGCTGTTCGGCCATCGTCAGGAGTGCTAAAGTCAAGTTTCACGGAGGGGCCAGCTGGCTCTACAACCTCTTCAGTAGGTATATTGACAAAGCTCTGCGCAAGTCTATTAAAAAACAGCTTTGTCCCTTGGTCGCTAAATCCATAGAAGGGTTGAATCCTCGGCTGCAGACATTGAATGTGCTGGCAAAAGTGGACAAGTATTCAGAGATTCAATACTCCCTGGTGTCTTCCCCCTCGGTGACTAAGAACTACATTGATCTGTACCTAAAGGGTGAGTTCTATGCCATTGCACACCATCAGGAGCCTCCCTTTACGGCCCCAGCCTTCTCCCTCCCAGACCAGGCCAAAAGTATGCTGTATTTGGGATTGTCCCAATATACACTCAACACTGCTGGCTTTGTCTACAACACCTTAGGACGGCTCAGCATTGACATCACAGACGACATGCTTCCCAAAAGCTCCCCCTTCCGCCTCAACACCAAAAGCTTCCAACTGATCATTCCTGAGATTGAAAAGAAGTATCCCAACATGCCAATGAAATGTGTTGTGAAGACCAGCAAGCAGCCACTTATCACCTTTGAGCCCAACAATGCAACTCTCCAGGCTGCTGGCACAGTCACTGCCTATGCCATCCAGCCTAACTCCACACTCGCCCCACTCTTTATTATCAATGTGGTCACTAGTGTGAGTGCTAAGGTCTACATCACTGGGACGAACATAGCTGGGTCTGTGTCACTGAATGGGTTGGAGATATCACTGGTGGAAAGCTACGTGGGACCTTTTCAGGTCCAAGTCCTCAATAACGTCGttccattcattttgaaaacgGTTGTTCTACCCCAGGTTAATgCATACCTCAAAAAGGGCTTTCCTCTTCCAACGCTCAGGAAGATGAGCCTTGTGAATCCCCAGATACAGATACAAAAGAACTACCTGTTGATCGCAACCGACGTTCGCTTCCAACCCTGAGTCCTGCGTGACATCAGCGTTCTGTTCAGATGCCTGCTGCCAATCACTGTCACATAGTAACCACTGCTGAAATGGATGGATTTTCCTTTACTTGCTGATTAttaataaaagcacattttaacaaTGCAATTGTTGGTGTAAGAGAGCATCAGACGTGGTCAATGCAATGCCAAATCACATGGGGTCAATGAAATGAACAATATACATTAATCTAGGGGAATCACAAGTTTGACCTACCCATGTACAGATCGCAAAGTACAGATCTCTACCTAATTTTGTGGTAATTGAGTGCTGGAAGCCACCCTCTAGTATTTatcaatcaaaacacaattgGGCATAACTTGTGATTCACAGGTGggtcaaatatttaattttgtctagCCCTAAGAGTGGAGAACCATACTATACTAACTGTATATTATCAGAATCTGTAAAGCCCAGACAAGTAGTTTGTATTGAATCACAAACCAAAGCCAGTTATGTTACGCAAGATGAATGCAAGGGAATTTCCAAGTGAGTTTCAAACATATGTGTATCAGCTTAGTGCTCCAAAGTGAAGCCAGGTGGAAAGCACAGAAATGGAGGTGGGGTGGGAGGATGAAAGACAGCAGGGGATAATTGGGTTCTCTGTATTCAAGCAATCGTAACCTCTGTAGCTTCTTGGTTGTCTGTGATTAGGGGTGCTGACTGTTGTATTCACATTCAATCCTGATTGCTGTACTAGAGAGCCCCCTCTCCActgcccttcctccagagcccacccCTAAGAGGTGGAATCACCCTGTCCCCCAAGTCAGGACCACACAGTCCCTGAACACCATCCAGCGTCTGCTCATGATACACCTGTCAAGACTCTACCTGTAATACTGCAACCTAATCTATTGGACAACGCATGCTTCTTGAGAAAACTGTCAACCAGGGCAATTCTGTCTTAATGTCACCATATATAAAGGCAAAGGGGCTTTTTTGAGAATATCAACAAAATGAACTTGGAGAACTTTAATTACTGTGTtggtatgtatgtaaataaacaggC

Function

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008199 True 2638 mRNA 0.47 18 45375965 45399868

Neighbor

gene id symbol gene type direction distance location
AMCG00008193 pigt,LOC106567380 coding upstream 39711 45328163 ~ 45336254 (+)
AMCG00008187 NA coding upstream 106133 45245953 ~ 45269832 (+)
AMCG00008186 NA coding upstream 133613 45239938 ~ 45242352 (+)
AMCG00008188 ttll9 coding upstream 143264 45228642 ~ 45232701 (+)
AMCG00008181 NA coding upstream 254485 45107413 ~ 45121480 (+)
AMCG00008200 NA coding downstream 1001 45400869 ~ 45408463 (+)
AMCG00008204 NA coding downstream 16409 45416277 ~ 45423427 (+)
AMCG00008205 NA coding downstream 44070 45443938 ~ 45468459 (+)
AMCG00008198 NA coding downstream 84762 45484630 ~ 45486967 (+)
AMCG00008210 NA coding downstream 88764 45488632 ~ 45488966 (+)
G29148 NA non-coding upstream 21886 45353716 ~ 45354079 (+)
G28991 NA non-coding upstream 559302 44768677 ~ 44816663 (+)
G28995 NA non-coding upstream 577502 44795924 ~ 44798463 (+)
G28956 NA non-coding upstream 626057 44691541 ~ 44749908 (+)
G28931 col9a3,LOC106571930 non-coding upstream 1319357 44053965 ~ 44056608 (+)
G29223 NA non-coding downstream 139901 45539769 ~ 45542206 (+)
G29271 NA non-coding downstream 326115 45725983 ~ 45734261 (+)
G29291 NA non-coding downstream 488081 45887949 ~ 45888412 (+)
G29320 NA non-coding downstream 693040 46092908 ~ 46093489 (+)
G29355 NA non-coding downstream 868807 46268675 ~ 46268989 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other upstream 32051 45340574 ~ 45343914 (+)
AMCG00008185 NA other upstream 204137 45147397 ~ 45171828 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other upstream 339549 45023148 ~ 45036416 (+)
AMCG00008132 NA other upstream 2070435 43292596 ~ 43305530 (+)
AMCG00008120 NA other upstream 2219893 43144805 ~ 43156072 (+)
G29183 NA other downstream 40645 45440513 ~ 45441064 (+)
G29353 NA other downstream 868023 46267891 ~ 46268327 (+)
G29418 NA other downstream 2180345 47580213 ~ 47586235 (+)
G29421 NA other downstream 2195236 47595104 ~ 47595686 (+)
AMCG00008232 ddx27 other downstream 2223084 47622952 ~ 47671421 (+)

Expression


Co-expression Network