AMCG00008201 (LOC106582837)


Basic Information

Item Value
gene id AMCG00008201
gene name LOC106582837
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45421765 ~ 45435361 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008201
TATCTACCTAGTACCGAGTAATGCACATGCAGTTTAATTTGGACAAGGTGTGCGATCCCAGCTCTTTCCGCTCCGTGCCTTATGCAGTGCAATAACCAGAGGTCCACTCTGGGTAATCAAGTGTGCCTGGTGTCTTTCTGCAGGTTTGATCTCTCTGGTCTTGTTTGGCCTTGTGCTGGGCGCTCACAGCCTGACACCGTCTTATCACCTCTCCCCTACGGATGTGGCCAGACTGGAAGCCTTCTTGAACCAGCCCCTAACGGACCTGGAGTCGGCCTACTACTCCATCGTGGGGCTGAACAAGTTGGGAACCCGAGTGTCCGATGAGAAGCATGCTTGCCAGTTCCTGAAATCCCAGCTTGACCACAGCAGTATTGACTCACTGTTTTTTGCGGCGGAGGCCAGTCAGGCGCTCTCAGGCTGCGAGATCCCAGTGTCCAATGAGACCCGCGATATCCTCCTGGCGGCTGTGAGTGAGGACTCCACTGTGACGCAGATCCACCGCTCAGTGAGCGCACTGGCCTCTCTGGGCCTGCCCCTCGCTTCGCAGGAAGTTGTCAGTGCCCTGGCTACCCGCATCACCAAGGAGGATAATGTCCTGGCGATTACACTGGCGCTCCAGACGGCCTCTCGTCTCTCTCAGCAGGCCGAGCTGGGGGGCATCCTCGAGGAGATAGAGgATCTGGCAGCCAGGCTGGATGATTTGGGCGGGGTGTACCTGCAGTTTGAGGAGGGGCTGGAGGTCACAGCCCTGTTTGTGACCGCAGCCTATGCCCTCTCTGACCATGTGGGAATGGAGCCCCCCCTGAAAGAGGATCAGGTAATCCAGCTGGTGAACTCAGTCTTCAGTAAGAAGTCTTGGAGTTCTCTCGCGGAGGCCTTCAGTGTGGCCAGCGCTGCGGCTGCCTTCTCCAACAACCGCTTCCACATCCCCGTCATTGTCAGTGCCCAGGGCCCTGCCACCGTGTCCCACAGACAGCCAGTCCTGCAGCTCCTGGTCACCAATGTGCTGTCCCAGTCCCTGACCTCTGCCAGTGTCCAGGCAGAGTCCGCACGTGCCGTGTCCACCAAGAGTGTTGTCCTCAACCAGGCACCCTTCACACTCCGAGAGGAGAGCTTTGAGCTGAACTTCATGGACAGCCAACCAGCCAGCGGTTACTACGAGTTCACAGTCGCTGTGTCCGGGGACAGCCGCTTTGTCGCAAACCAGGTGGAGCTGAAGGTTAAAGTTTCTACTGAAGTGGGCATCACCAATATGGATCTGTCTGTCGTGGACAAGGACCAAAGCATCGGCCCAAAGACTACCAGGGTGGAGTATCCCAATAAGGCGAAGGGCAGCTTCACTGCAGACAGTCACCAGAACTTTGCGCTGTCCTTCCAGCTGGTGGATGTGAACACAGGAGTGGAGTTGACTCCGCACCAGACCTTCGTTCGGCTCCATAACCAGAAGACTGGTCAGGAGGTGGTGTTTGTTGCTGAACCGGACAGTAAGAACGTGTACAAGTTTGAGCTGGACACCGCAGAGAGGAAGTCTGAGTTTGATTCCATGTCTGGTACCTACGCACTGTACCTCATTGTGGGGGACGCAACTTTGGAGAACCCCATCCTCTGGAATGTGGCAAGTCCTCTTTTAATTCATGCAGCTGCTGATGTTTTGCTGAAGTTCCTGGATGAGGAAGCACCCTCTGTTATACAATCCAAAAACCTCTATGTTCCCAAGCCAGAGATCAAGCATTTGTTCCGGGAGCCTGAGAAGAAGCCACCGACGGTTGTGTCCAACACCTTCACAGCCCTGGTTCTCTCCCCCTTCCTGCTGCTCCTCATCCTGTGGTTCAAGCTCGGTGCCAACATTTCAAACTTCAGCTTCTCCCCCAGCTCCATCCTCTTTCACCTGGGCCATGCGGccATGCTGGGACTGATGTACGTGTACTGGACTCACCTCAACATGTTCCAGACCCTCAAGTATCTGGCCATCTTGGGCAGCCTTACGTTCTTGGCTGGAAACCGAATGTTAGCCCAGAAAGCAGTGAAGAGGATTGCTGCAGAGCAGAGTTGTAGATTGGCAAAGTATAGGAGCCTGCGGTAAAGAGGGCtttttacagaaacaaagtTGCAGTCTTCTGGGCTGAAaAGCGGAAATCCTTCATAATACAAAAGAGGTGGAAGATTTtgaagaatttttttttttttttataaaaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X1

GO: NA

KEGG:

id description
K12667 SWP1, RPN2; oligosaccharyltransferase complex subunit delta (ribophorin II)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008201 True 2211 mRNA 0.54 17 45421765 45435361

Neighbor

gene id symbol gene type direction distance location
AMCG00008202 LOC102194700 coding downstream 6952 45409263 ~ 45414813 (-)
AMCG00008195 NA coding downstream 71678 45344179 ~ 45350087 (-)
AMCG00008197 LOC106572146 coding downstream 81884 45337454 ~ 45339881 (-)
AMCG00008196 NA coding downstream 118799 45295300 ~ 45302966 (-)
AMCG00008189 LOC107550338,LOC103365918,LOC106955159,LOC104947949,LOC107551495 coding downstream 141411 45272415 ~ 45280354 (-)
AMCG00008203 NA coding upstream 31822 45467183 ~ 45484122 (-)
AMCG00008209 ift52,LOC107730620 coding upstream 62745 45498106 ~ 45503562 (-)
AMCG00008206 sgk2a,sgk2,LOC107564803 coding upstream 68681 45504042 ~ 45518710 (-)
AMCG00008208 NA coding upstream 89866 45525227 ~ 45537055 (-)
AMCG00008207 LOC108254894,LOC105009000,LOC108427776 coding upstream 104396 45539757 ~ 45546688 (-)
G29182 NA non-coding downstream 1303 45419590 ~ 45420462 (-)
G29170 NA non-coding downstream 67679 45353807 ~ 45354086 (-)
G29081 NA non-coding downstream 385352 45034445 ~ 45036413 (-)
G28976 NA non-coding downstream 733590 44682437 ~ 44688175 (-)
G28978 NA non-coding downstream 739996 44681425 ~ 44681769 (-)
G29192 NA non-coding upstream 26418 45461779 ~ 45462530 (-)
G29206 NA non-coding upstream 54646 45490007 ~ 45490890 (-)
G29249 NA non-coding upstream 164198 45599559 ~ 45714037 (-)
G29284 NA non-coding upstream 358317 45793678 ~ 45793951 (-)
G29294 NA non-coding upstream 543899 45979260 ~ 45979468 (-)
AMCG00008192 NA other downstream 193261 45149501 ~ 45228504 (-)
G28970 NA other downstream 1003569 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 1838352 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 2301601 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 2657111 42761004 ~ 42764654 (-)
G29301 NA other upstream 615334 46050695 ~ 46054346 (-)
G29361 NA other upstream 1045585 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 2144778 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 2231281 47666642 ~ 47918462 (-)
G29544 LOC100846954 other upstream 2688564 48123925 ~ 48124682 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_00252333_00267027 RPN2 coding CI01000058 null 252283 ~ 267027 (-)