AMCG00008209 (ift52,LOC107730620)


Basic Information

Item Value
gene id AMCG00008209
gene name ift52,LOC107730620
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45498106 ~ 45503562 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008209
CTTCATGCTGTTATGTGTAGATATAAAGCGTTTGAAATGTGTAACTATCGGTCACAACGAATCGTGAAGTTTTAAACGGCAATATGttgaaatgcaaaagaaaatgactgaaGTTTTGAATGGAAATGGTATCTCTTGAGCCGATGTGTATAACAGGTAATACCCCCAGCTGGCAGGATGCAGAAAGAGCAGCGAAACACCATCGTGTTCAGTGCCTCCAAGAGAGAATTGTTCACAGCGAACAACGGTTACAAGTCGCTGCAGAAGAAACTCCGAGCCCAATGGAAGATCCAGAGTTATAAAGAAGAACTTGCCCCAGAGAAGCTGAGCGGTGTGAAGCTGTGGATCACGGCGGGACCCAGGGAAAAGTTCACTGCGGCTGAGCTGGAGGTGCTGAAGCGACACCTGGAAAGTGGTGGCAATGCCCTGGTAATGCTGGGCGAGGGCGGGGAGCTCAAGTACGACACTAATATTAACTTCCTGCTGGAGGAGTATGGGATCATGGTGAACAGCGACACGGTAATCAGGAATGTTTACTATAAGTATTTTCACCCGAAGGAAGCGCTTGTATCCAATGGGGTCTTAAACAGAGAGGTCAGTCGTGCAGCAGGCAAAGTGGTGACTGGCATCATTGATGATGAAAGCACTGGGAATAACTCTCAGGCTCTGACCTTTGTGTACCCATATGGAGCCACCCTCAGTGTGGTAAAGCCTGCTGTGGCTGTGCTGTCCACCGGCTCAGTCTGCTTCCCCCTCAACAGACCTGTCCTTGCCTTCTACCAGGTGAAGGAGGGAGGGCGCCTGGCAGTCCTGGGCTCCTGTCATATGTTCAGTGACCAGTACCTGGACAAGGAGgagaacagtaaaataatggGAAGTGATCACCAGTTTCCGATATCATACGATGTTGTATTCCAGTGGCTTATGACAGACGACATTCACTTGAACCAGATTGATGCTGAAGACCCGGAGATCTCGGACTACACCATGCTGCCAGACACGGGGCGGCTGTCTGAGCGCTTGCGGGTGTGTCTGCAGGAGGGTGACGAGAACCCACGAGACTTCACCTCCCTCTTTGACATGTCCCTGTTCAGACTGTCCACCAGCTCTCTGCCGCAGGTCATCCACTCCTATAAGCAGCTGCATGTGAAACACGAGCCACTGCAGCTGATCCAGCCTCAATTCGAGACGCCGCTGCCCACACTACAGCCTGCTGTCTTTCCACCCACCTTCAGAGATCTCCCTGCACCCACACTTGACCTCTTTGACCTCGATGAGACCTTCTCCTCTGAGAGAGTGCGCTTGGCCCAGCTTTCAAACAAGTGCACAAACGATGATCTGGAGTTCTATGTGCGGAAGTGTGGTGACATCCTGGGGGTGACCAGCAAACTGGACAAGGACCGCAGAGACGCCAAGCACATCCTGGAGCACATCTTCTTCCAGGTCGTGGAGTTCAAGAAGCTCAATCAGGAGCATGATATTGACACCACTGATGCAAGATTCTCTCCATTCTAAGAAAACCAATGTCAGGACAAGTGTTTGTACATATGTAAAATGAATAgtacttttcaaaatgtttgtatattg

Function

symbol description
ift52 Acts upstream of or within cilium assembly and intraciliary transport. Located in axoneme and ciliary basal body. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; neural tube; and pronephric duct. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy. Orthologous to human IFT52 (intraflagellar transport 52).

NR:

description
PREDICTED: intraflagellar transport protein 52 homolog

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0005930 axoneme cellular_component

KEGG:

id description
K19681 IFT52; intraflagellar transport protein 52

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008209 True 1587 mRNA 0.50 14 45498106 45503562

Neighbor

gene id symbol gene type direction distance location
AMCG00008203 NA coding downstream 13984 45467183 ~ 45484122 (-)
AMCG00008201 LOC106582837 coding downstream 62745 45421765 ~ 45435361 (-)
AMCG00008202 LOC102194700 coding downstream 83293 45409263 ~ 45414813 (-)
AMCG00008195 NA coding downstream 148019 45344179 ~ 45350087 (-)
AMCG00008197 LOC106572146 coding downstream 158225 45337454 ~ 45339881 (-)
AMCG00008206 sgk2a,sgk2,LOC107564803 coding upstream 480 45504042 ~ 45518710 (-)
AMCG00008208 NA coding upstream 21665 45525227 ~ 45537055 (-)
AMCG00008207 LOC108254894,LOC105009000,LOC108427776 coding upstream 36195 45539757 ~ 45546688 (-)
AMCG00008217 NA coding upstream 136724 45640286 ~ 45641803 (-)
AMCG00008215 lpin2 coding upstream 141686 45645248 ~ 45662347 (-)
G29206 NA non-coding downstream 7216 45490007 ~ 45490890 (-)
G29192 NA non-coding downstream 35576 45461779 ~ 45462530 (-)
G29182 NA non-coding downstream 77644 45419590 ~ 45420462 (-)
G29170 NA non-coding downstream 144020 45353807 ~ 45354086 (-)
G29081 NA non-coding downstream 461693 45034445 ~ 45036413 (-)
G29249 NA non-coding upstream 95997 45599559 ~ 45714037 (-)
G29284 NA non-coding upstream 290116 45793678 ~ 45793951 (-)
G29294 NA non-coding upstream 475698 45979260 ~ 45979468 (-)
G29348 NA non-coding upstream 747101 46250663 ~ 46251181 (-)
G29354 NA non-coding upstream 764331 46267893 ~ 46268278 (-)
AMCG00008192 NA other downstream 269602 45149501 ~ 45228504 (-)
G28970 NA other downstream 1079910 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 1914693 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 2377942 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 2733452 42761004 ~ 42764654 (-)
G29301 NA other upstream 547133 46050695 ~ 46054346 (-)
G29361 NA other upstream 977384 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 2076577 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 2163080 47666642 ~ 47918462 (-)
G29544 LOC100846954 other upstream 2620363 48123925 ~ 48124682 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003125 ift52 coding NC_007122.7 CM002895.2 1533097 ~ 1546015 (+)
grasscarp (Ctenopharyngodon idella) CI01000057_05842522_05847302 IFT52 coding CI01000057 null 5842319 ~ 5847302 (-)