AMCG00008213


Basic Information

Item Value
gene id AMCG00008213
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45717392 ~ 45724427 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008213
TTACTTCGGAATGAGGTGCTACTGCGCCTGTCACTCACTCCGTGACACCTCGCAAGGGCTCCGGCGTGTGCGAGCGCCGATTGGCTGCGACGGCCTCGGGGGGAGGGACTTTCCCAGTTTCGGCTGTCAGATTGGCAAGGCGAGGAGGGACTTGCCGCCGCGGCTCGCAGGTAGACGGGATAAAGCGACAGGACGACTGACACAGGCGATCAGGCGGAAAATGCTCGTGAAAGCCCCGAGTGCGCCGTAAAAACGACACGGAGCGGGCGGCAGGGTCGGAGCTGCGGGGACGGCGAGAGCATTTGCGGCGGCTGTGCGACGCCAGCGCTCCGGGTGCTGGAAACTCCCGTGCGTGGGGCTGCGGAGGGGCACGCATTTTGCACGGAACTTCAAAGAGCGCTGCCTGCACGCCAACGAACCCCCAACCATCACAAAGAATGAAAGCTTTCAAGAGAGTTCTAGAGGAGGAGCCGGCAGTGGAGCCTGAGTTTTCCATGATGTCAGACAGCGACCCGTGTGAGGATGATGGGGGTGGCGGGTTCCCCTTGGACCTGTCTGGAGGCTCCAGAAAGAGACGCCGTCGTGGAAACCTCCCTAAAGAAGCTGTGCAGGTGCTGAGAAGCTGGCTGTACGAGCATCGCTTCAACGCCTACCCATCGGAGCAGGAAAAACTCAGTCTGTCGGGTCAGACCAGCCTCTCTGTGTTACAGATCTGTAACTGGTTCATCAACGCTCGAAGGCGGCTGCTCCCAGACATGCTCCGCAAGGACGGCAAAGACCCCAACCAGTTCACCATTTCCAGACGGGCCGGCAAGGTCTCGCTGGGCAAAGCTGGCTCTCCTGAGACCACCGCTTCCTCTCTGCCCAGCCTGCGCCCCTCAGTCATCCGCCCTGCCCCCACCCTGGACCTCAGTCTCCTGGGCAGCACAGCCACCGCCATCCTTACCGGTGCTGGCTGCCTGGCGGCCGTGCCAGGGCTCCTGGGCCAAGAGCAACACCCTGGGTCTATGCTGAAGCCAGGTGAGAGGGCAGTAAGCCTGAGTGAGGCCAACCCTTCCAGCACCTCCACCATCCTGAGCAGGGTGGACTCCGTCAGCCCGACAGGGGGACTTTTCAACACgccaccccccacaccccctgACCTCTGCCTGCAGGACTTCAGTGACCTGCGGCTGCTGGTGGATGCGGCGCTGCAGCGGGCAGCCGAGTTGGAGAACCAGCAGATAGAGAGGAGGCCGAGCGGGACGGGCGAGGGCGAGGCCAGGGAGTATGAGGGCGTCCGTGCAGAGCCACCACACGAGGCCCCAAGGGAACTCGACTCGTCTGGGGAGAAAGCCCTGCTTGACCAGGGAGAGGAGAAGATTGCTGTCCGTGGGCGGACCTCTCCAAGTACACAGACTGCATCCCCGGCAGCCGACCGCAGCCGTGGCCAGAGGGCCGAGGCTGTGACTCTGTCCTCCGCAGCGCCCAGCGTGCTGGGCCTGGGTGTGTATGAGCAGAGCGTGTGGAGCATGGTGCCGCCACCAAGCGCAGGGCCCTGTGGGTGGGGGCCCCAGCATTCCCTGCTTTCTGTGAGAGAGGCCGTTAATTAGAGCCCAGAAAGGAAACTACAGGAGATGAGGCCACTGCAAAGATCTGATTTTCATCTAGGGCAATGTTGgcacactatttttttttctccctcttttaTTCTGTCTACACATGACTCGAATATTTCCAAGTATGCC

Function

GO: NA

KEGG:

id description
K19553 TGIF2; homeobox protein TGIF2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008213 True 1727 mRNA 0.62 3 45717392 45724427

Neighbor

gene id symbol gene type direction distance location
AMCG00008215 lpin2 coding downstream 55045 45645248 ~ 45662347 (-)
AMCG00008217 NA coding downstream 75589 45640286 ~ 45641803 (-)
AMCG00008207 LOC108254894,LOC105009000,LOC108427776 coding downstream 170704 45539757 ~ 45546688 (-)
AMCG00008208 NA coding downstream 180337 45525227 ~ 45537055 (-)
AMCG00008206 sgk2a,sgk2,LOC107564803 coding downstream 198682 45504042 ~ 45518710 (-)
AMCG00008214 NA coding upstream 13061 45737488 ~ 45760782 (-)
AMCG00008216 NA coding upstream 53035 45777462 ~ 45786981 (-)
AMCG00008222 NA coding upstream 387509 46111936 ~ 46123767 (-)
AMCG00008223 NA coding upstream 413321 46137748 ~ 46150163 (-)
AMCG00008224 ctnnbl1,LOC106566902 coding upstream 476365 46200792 ~ 46234987 (-)
G29249 NA non-coding downstream 3355 45599559 ~ 45714037 (-)
G29206 NA non-coding downstream 226502 45490007 ~ 45490890 (-)
G29192 NA non-coding downstream 254862 45461779 ~ 45462530 (-)
G29182 NA non-coding downstream 296930 45419590 ~ 45420462 (-)
G29170 NA non-coding downstream 363306 45353807 ~ 45354086 (-)
G29284 NA non-coding upstream 69251 45793678 ~ 45793951 (-)
G29294 NA non-coding upstream 254833 45979260 ~ 45979468 (-)
G29348 NA non-coding upstream 526236 46250663 ~ 46251181 (-)
G29354 NA non-coding upstream 543466 46267893 ~ 46268278 (-)
G29375 NA non-coding upstream 931807 46656234 ~ 46656566 (-)
AMCG00008192 NA other downstream 488888 45149501 ~ 45228504 (-)
G28970 NA other downstream 1299196 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 2133979 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 2597228 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 2952738 42761004 ~ 42764654 (-)
G29301 NA other upstream 326268 46050695 ~ 46054346 (-)
G29361 NA other upstream 756519 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 1855712 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 1942215 47666642 ~ 47918462 (-)
G29544 LOC100846954 other upstream 2399498 48123925 ~ 48124682 (-)

Expression


Co-expression Network