AMCG00008215 (lpin2)


Basic Information

Item Value
gene id AMCG00008215
gene name lpin2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45645248 ~ 45662347 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008215
TTCAGAGTGGGGAATGCTGGGAGTGCTGGTGTCTGATGGCAGCTGGGGGGTCTGGGGAACAGAGCCTCATGGGGAGGGTGcccctccacccctccctcTGGTCTCAGACCATGAACTACGTGGGCCAGCTGGCGGAGACCGTCTTCGTGACGGTGAAGGAGCTCTATAGGGGCCTGAACCCGGCCACGCTGACCGGGGGCATCGATGTGATTGTGGTGCGGCAGCCCGATGGCTCCCTGCAGTGCTCCCCTTTCCACGTGCGCTTCGGAAAGCTGGGCGTGCTGCGCTCCCGCGAGAAAGTGGTGGACATCGAGATCAACGGGGAGCCTGTGGAGCTGCACATGAAGCTGGGAGACAACGGGGAGGCCTTCTTTGTGGAAGAGAACGAGGACTTCCAGGAGAGGGTACCGGCGCACCTCTGCACTTCTCCGATCACCCTGGAGGGCAACGAAGACAGCGAGTCCCCCCTCAATTCCACGTCCCGAAGGAAGAAGCGTCGCCGCAAACGCACTCGCTCAGACGCCCCCTGGAGAGAAAAGGAGGACTCGTCTGCTGACGAGTGGGACGTCCCAGAGAGTGAGGGGCCAGGGGAGGAGCTCACCGCCAACATTGTACCTAGCGCTTCAGTCTACTATTCGTTTTCGGAGGAGCCAATGGAAAACCTGGGAAGCGCTCAGTCCCGGGGTGTCCATCCCTACTCAGACGGGGAGTGGTCGCCGTCCGAAAGTGTGTTCCAGAGCCGGCCTTCTTCCCCAAAGAGTGACTCTGAGCTGCTGGTTAAGCCCCAGGAGTCCACAGGCCCCCAAATGCACTGGGCTTGGGGAAGCTTCCCAAAGGTCAGACCAAGTGACAGAGTTTCAGCAGAGGCCCCGTCAGTCTCCACTTCCATCCAGCACTCCACGAATACCCACTTCCGCACCATCCAGCGGCAGGACTCCTTCGATCTGCATACTGAGGGGCTTGAGGGGAGCACTGTTATAGGCAGGGGGGTGACTGTCCTGAGGCCAGAGCCAAGAGGCAGACCACCAGGGCCGCCCACCCCAGACACAGTGCCACCTACAGCAGAGCCAGAGTCATGTACCACAGATTCTGCCCTGGGGGAAACCACACCACCGCCAACAAACTCTGTCATCCTTTATTCAGATGACACAGGGCCACTGTCACTGGAGTCACTGCAAGCAGAGGCAGCCAGCATATCAGAATCTAAAACTCCCATGGAAAAGAGCACTGAACTACCAGGGGTCTCAGCTGCCTGTCCAGGCCAAGCTGAGGAAATGGCAGCCCAGGATATTAGACTTGAGATCCCAGAACAGGGCAGGGCAGATGGAGTGGCTGAAGAGCAGACCCAGATTGTGACCGCAGAGGGAGAAAGCATCGGGACAGAGGGCCCTCAGAGCTGTCAAGCCACGGAGAGTGTCAAGGTGACGGAGAGCTCCCAGGGGGGTGCGGTAACTTCTGCAGAAACGGCTCTGAATCCTGAACCTCAAGAGAAGAAGAAAGGTTTGCAAGTTAAACGCAGCCAACATCTCGGGCCGACCGATATCTACCTAGATGACCTGACCAACCTGGACCCAGAAGTCGCAGCTCTCTACTTCCCCAAGAGCGACAATGATATGGGTCCTCGGCCCGGGGCGGAGCCAGGGTTACAATTCGATAACCAGTCACCGCAGTCGGTGGGCAGCGGGGCGATGGACAGTGGCACAGAGTACCTGTCTGACTCCACAGGGGACCTGCCAGAAGTCACCATGTCCTTGTGCGGCAAGGTGGTTGACACCAGTCACATCAACAAAGAGAAATTCATGGAACATGTGGTCAGCTTCCAGGACTTTGTCAACAACCCTGGGATCATTGAGGACCCGAACCTTGTCATCTGTATCAATTCCAAGTACTATAACTGGGCTGTCGCTGCTCCGATGGTCTTGTCAATGCAAGCTTTTCAGAAAAACTTACCAaagAGTGCTGTAGACCAACTAGTAAAGGACAAGATGCCAAAGAAATCAGGAAGATGGTGGTTCTCCTGGCGTAGGAAAGACCTGAACACTAACCAGCCGGAGTTGAAAGATGGCAACAACGGGGAGCCAAGGGAGATGGCGGTGCCTGAGCAGGGTCCCTCCACCTCACAGGATAAACGCGAGGAGACATCAAGCGACGATGATTCTAGGACAGCAAGGGGGACACGGCCATTGGAGCCCCTCTCCACAGCGCAGTGTATCAGTCAGATGTACCGGAAGTCTCTGCGCCTCACCTCCGAGCAGATTGAGCGTCTGAACCTGCGGGAGGGGGCAAATGAGATTGTATTCAGTGTGACCACTCAGTACCAGGGCACATGTCGCTGTGAGGCCGCCATCTACCTGTGGAACTGGGACGACAGGGTCATCATCTCGGACATTGATGGCACCATCACCAAGTCCGACGCTCTGGGCCACATTCTGCCTCAGCTGGGGAAAGACTGGACCCACAGGGGGATTGCCAAGCTGTATCACAAAATCCACCAGAATGGCTACAAGTTCCTGTACTGCTCAGCAAGAGCTATCGGCATGGCTGACATCACCAAGGGCTACCTGCAGTGGGTGAATGACAGAGGCACCGTCCTGCCCAAGGGTCCCGTGCTGCTGGCCCCCAGCAGCCTCTTCTCTGCTCTGCACAGGGAGGTGATTGAGAAGAAGCCAGAGGTGTTCAAGATTGCTTGTCTGACAGACATCAGGAATCTGTTCAACCCCAAGAGACATCCCTTCTACGCAGCTTTTGGAAACCGGACCAATGATGTTTATGCTTATAAGGAGGTGGGAGTGCCAGAATCGAGGATCTTCACTGTGAATCCCAAAGGAGAACTcatccaagaacaaaccaaaggCAACAAGTCATCGTACTCCCGGCTCAGTGAACTCGTAGAGCACCTCTTTCCCCTCCTTGTACAGGGCAAGAGCTCCTCCTTTGACTGCCCAGACTACAGTCACTTCTCCTTCTGGAGGGAGCCTCTGCCAGCCCTGGACCTCAGTGTCCTACAGTAGCCTCCTGTCTCACTCTGGGCTCCCTCTAGGGAGAGCAGGGACACTCTCCGTTCATGGCAGTGTAATAATAGCAGTCCTGTAGAGCTTCAGGGGAATCTCCTGGGTTTGTTAGCTacactttttttacatttctgttgtcCTAGAATGATGCACCAAAGACCGAGCCAAGGACAGGTACCGAAGGGAAAGTCAACCTGGTCCAACCCATCCTAGAGGTGGCACCATTTTGAGTGACGGGGCCAGATTTTGGGGCTGACTTTCTGAATGTGCTACACTTTACTGCCATTTACTCTTGGGTTTAAAGTGGTGCATCAGACTGCCCATGCCTTATCTCATGCACCAAAAATGCaagatgattttattttgcactgaatGTCCACAGGTTTTCAGGTCAGTTTGttagtctttatttaatttttttccgaTTGCATGACAATCTGTTTTGGGAGCACCAAGGAAATGGTAACCTGAATTGTCAAAATAAGCTGAATCTACTTTTATACTTAGTTTTGGGATTGTATTATTATGGGTGATGTTCTTTTCTTGCTACTCCCTCCATTTTCTATGGTTTCAAAACTGAATGTTTTAAGCACAATGCTAGCACTGTCTAATCTCCATGCATTGCACAGCATTCTTATAATTGAGAAGAAGTAATAAAGGAGGTGTATGTGTAGGCACTTTCTACAGCGAAATGTTACAAAATGACGACACTGGAAATGTGTGCCAAAACAAGAATGTTCTAGTTTGAGTTTGATTTAACAAGGAATATAATCCAGTTGATTTAATATCTTCAAGTGGTGTCTTAGGTCTGGGTTGCACAGCAAAAACCTTCAGAACAACCAATGTATATTAATCAGTGTCTCCCAATACTGTGCGATTAATTGTTGGAAGCAGCAATTAGCATATCCCAACAAAACCATCAGAACTAGATGAGAACTTCAGAGACGGCTTAAAACAGTTAATGAACCTCACTGTGCattgtgtcattttaattcTGGCCAGTTAGTGTGTATCATTAAGGTAGCAAATTACTTCACCTATTAATGTGAGCAGGATGTTCGTCCTTGGAGTCGACTTTTGGTATAACGAGGTCGGCCACAGTACAGAGCTTCCCTTCGCAATTAACTTCTCCCTGTGGACACGAGATTCAGCACTGCCTGCATTGGAAGTGGAACACTAGAAGGCAGAACACATGAACCTTCAAGGAAAGATGATCTCTTTAGGTGACACTAGCAAACAAAGACTGGACATTTGACACAAATGGgaatggaaattatattttatttatctacttTTGGGCCAAAGTTGCACATTATCTATTCAAACACTAAGAAAACACTACCTTGATATGATTTATACCATTGCAGACTATTGTGAATTCTTATCATACTTTACAAACCTGttatcaattaaacaaaaaagacaaaaaaaaaaaaaaaatttcatGCATATCTGGAAAATACTGCTTCTTTGGTTTTAAATACTTGGtcttttctttccattattattatgttgtttgtttctttttggtaCTTTGGATAACTTGCAAAAAACAATACCTGAATGACtagttattaaaattgtatctAGTAAAGATAcagtgacattttttaattgtacatccATAATTAGATTGCCAGGAGTatgtattttactaaataaaaggTTATAAAATATGCAGCCAGTCTATTACAGAGTGCAGTCAAGCCACTTATATCAGCGATCTGAAAGGGATAGAAGTTCCAGACCTCTGTCTCTCAGTCCTCATTGAAGACTGCAGTCTGAGATAAGGGCTACtggaaagaaataaatacaaataatattgaattgttAGAAGTTGGTGTATGTGAAGCTTTTTACTGTGATGTGCCCCAGTTCACAAGCTATAGTTTGGAAAGGTACAATATGCTATAAGACCATTTGTCATGAAAGGAGAGATGGACTGGTCAGATGCTTCATTTGAACTGTTGTTGGTCATGGGATTGTTTTTCATCTTGGAAAAGATGGTGAGCTCCACAATCCTGTTGATGACATCCTCCGATAGTGACCACCCAAGGAAATGCATGATCGATTTCCTGTCTCAGGTTCTGGCAGGGAAGAGAAGCCGTGAAAGCGTGGTAAGGCGGAGAtctgattttatgttttaattgtttactcAAATCGTGTTACCAGAAACTTGATTTGccgaaaatgtattcaaatagcCCTTCAAAAGGGAAACTTTCAATTCTGGTAGTAATACTATTAAAGGCTGAAATTATATCCATCTGTGTCTGTCTATTatgtagagcaggggttcccaaccctgctcctggagg

Function

symbol description
lpin2 Predicted to enable phosphatidate phosphatase activity and transcription coactivator activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; fatty acid catabolic process; and triglyceride biosynthetic process. Predicted to be active in cytosol; endoplasmic reticulum membrane; and nucleus. Orthologous to human LPIN2 (lipin 2).

NR:

description
PREDICTED: phosphatidate phosphatase LPIN2

GO: NA

KEGG:

id description
K15728 LPIN; phosphatidate phosphatase LPIN

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008215 True 5329 mRNA 0.49 20 45645248 45662347

Neighbor

gene id symbol gene type direction distance location
AMCG00008217 NA coding downstream 3445 45640286 ~ 45641803 (-)
AMCG00008207 LOC108254894,LOC105009000,LOC108427776 coding downstream 98560 45539757 ~ 45546688 (-)
AMCG00008208 NA coding downstream 108193 45525227 ~ 45537055 (-)
AMCG00008206 sgk2a,sgk2,LOC107564803 coding downstream 126538 45504042 ~ 45518710 (-)
AMCG00008209 ift52,LOC107730620 coding downstream 141686 45498106 ~ 45503562 (-)
AMCG00008213 NA coding upstream 55045 45717392 ~ 45724427 (-)
AMCG00008214 NA coding upstream 75141 45737488 ~ 45760782 (-)
AMCG00008216 NA coding upstream 115115 45777462 ~ 45786981 (-)
AMCG00008222 NA coding upstream 449589 46111936 ~ 46123767 (-)
AMCG00008223 NA coding upstream 475401 46137748 ~ 46150163 (-)
G29206 NA non-coding downstream 154358 45490007 ~ 45490890 (-)
G29192 NA non-coding downstream 182718 45461779 ~ 45462530 (-)
G29182 NA non-coding downstream 224786 45419590 ~ 45420462 (-)
G29170 NA non-coding downstream 291162 45353807 ~ 45354086 (-)
G29081 NA non-coding downstream 608835 45034445 ~ 45036413 (-)
G29284 NA non-coding upstream 131331 45793678 ~ 45793951 (-)
G29294 NA non-coding upstream 316913 45979260 ~ 45979468 (-)
G29348 NA non-coding upstream 588316 46250663 ~ 46251181 (-)
G29354 NA non-coding upstream 605546 46267893 ~ 46268278 (-)
G29375 NA non-coding upstream 993887 46656234 ~ 46656566 (-)
AMCG00008192 NA other downstream 416744 45149501 ~ 45228504 (-)
G28970 NA other downstream 1227052 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 2061835 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 2525084 43097111 ~ 43120164 (-)
G28581 mafba,mafb,LOC107562627,LOC107713570,LOC106535696 other downstream 2880594 42761004 ~ 42764654 (-)
G29301 NA other upstream 388348 46050695 ~ 46054346 (-)
G29361 NA other upstream 818599 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 1917792 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 2004295 47666642 ~ 47918462 (-)
G29544 LOC100846954 other upstream 2461578 48123925 ~ 48124682 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000130_00247327_00260347 NA coding CI01000130 null 247327 ~ 260954 (+)