AMCG00008218


Basic Information

Item Value
gene id AMCG00008218
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45867343 ~ 45911607 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008218
TGAGGTGTGTGATCATATTAGAACCAATCAAAAACACCTATGTTGACCAATAGAAAATACCTATATTGAGTTCAGCATTGTTTCAATTCTGACCAATCAGAAcgatatatatacatttgaccAATGAGAATGATCTCTGGACTTGACCAATCAGGACGAACGCGTTTGTCCAAGTCCTGGCTGCAGAAATTCGTGGCACCTTTGTCAGCCGAGCGGCGCGGAGGATCCCTGCGGAAAGCAGAAACACCCAGGCCTGGGAAGATGGCGAAAACGCGTATCCCTGAAACCGGTGGCAGGCGAGCGGCGGTACAGTCGTCGAAAACGGGAGCCAAGGAAGTGGAGGCCGTAGGGAGACCGCAGAAGGTCCGAGGTCCGAAAGAAGCAGGACAGTGTGTCGGGCCGCCGGCGGGGGAGGCAGAGGCGCGCCGGGGAGCACAGAAGCGGGGGAGAGCAGAGCCGAGCGGTGCGGTGGAGAATCTGGGGCTGGCGGCAAAGCGGAGGAAGAACAGCCAGTTCCCGGTGAAAATGGGCAACGGGATCCACGATCAAGAAGCCACAGCATGGGTCAGTCCTGTGCGCAtcaaggaggaggaagaggaggcggCGGTGAGCACAGCGCGCATCAAAGtaatattcGTTCCAAAAATGCCAAAAACAGACGCAGAGCGTCAAAAGGCATACagggacaggaaaaaaaatgatgcagctttcaaagaaaaggaaaagatgaGAAAACAAGCTGAACGTTTAAGAAAAAAGCTAACTCAGTCAGAGGATGAAGAGGAAAGGaACAGGAAAGCACACCTTTGTCAGtccgagagggagagaggataA

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008218 True 834 mRNA 0.52 3 45867343 45911607

Neighbor

gene id symbol gene type direction distance location
AMCG00008212 myl9,LOC106565219,LOC103045271,LOC101062217,LOC100697131 coding upstream 153300 45708568 ~ 45714043 (+)
AMCG00008211 NA coding upstream 228554 45599200 ~ 45638789 (+)
AMCG00008210 NA coding upstream 378377 45488632 ~ 45488966 (+)
AMCG00008198 NA coding upstream 380376 45484630 ~ 45486967 (+)
AMCG00008205 NA coding upstream 398884 45443938 ~ 45468459 (+)
AMCG00008219 NA coding downstream 128341 46039948 ~ 46068818 (+)
AMCG00008220 NA coding downstream 165700 46077307 ~ 46090993 (+)
AMCG00008221 LOC102785565 coding downstream 212523 46124130 ~ 46131017 (+)
AMCG00008226 NA coding downstream 618843 46530450 ~ 46530758 (+)
AMCG00008239 NA coding downstream 1889491 47801098 ~ 47813090 (+)
G29271 NA non-coding upstream 133082 45725983 ~ 45734261 (+)
G29223 NA non-coding upstream 325137 45539769 ~ 45542206 (+)
G29153 NA non-coding upstream 488990 45378011 ~ 45378353 (+)
G29148 NA non-coding upstream 513264 45353716 ~ 45354079 (+)
G28991 NA non-coding upstream 1050680 44768677 ~ 44816663 (+)
G29320 NA non-coding downstream 181301 46092908 ~ 46093489 (+)
G29355 NA non-coding downstream 357068 46268675 ~ 46268989 (+)
G29358 NA non-coding downstream 566885 46478492 ~ 46478774 (+)
G29368 NA non-coding downstream 598777 46510384 ~ 46531909 (+)
G29372 NA non-coding downstream 623360 46534967 ~ 46535184 (+)
G29183 NA other upstream 426279 45440513 ~ 45441064 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other upstream 523429 45340574 ~ 45343914 (+)
AMCG00008185 NA other upstream 695515 45147397 ~ 45171828 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other upstream 830927 45023148 ~ 45036416 (+)
AMCG00008132 NA other upstream 2561813 43292596 ~ 43305530 (+)
G29353 NA other downstream 356284 46267891 ~ 46268327 (+)
G29418 NA other downstream 1668606 47580213 ~ 47586235 (+)
G29421 NA other downstream 1683497 47595104 ~ 47595686 (+)
AMCG00008232 ddx27 other downstream 1711345 47622952 ~ 47671421 (+)
AMCG00008238 hsp70l,hsp70.3,LOC105896343,LOC105896344 other downstream 1752910 47664517 ~ 47716582 (+)

Expression


Co-expression Network