AMCG00008220


Basic Information

Item Value
gene id AMCG00008220
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 46077307 ~ 46090993 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008220
AACGGACTCTGCTGCCTCAGTCCACAGAGCCTTGGCTACTTAGCAGAACCAGAATCAGCACAAACACTTCACTTCATCAAACAATGGCATCAGcacttGACATTGCCAGGTTCAGTTTGGCATGCGACTTTAATAATGCCGATCACCGGACTGACCTGAATGGAACTGATCGTTTGATTGTGCGGAGAGGCCAGCCATTCACCATCACTATGCACCTTCGCTCGGGGCACTTCCAGGCAGGAGTGCACAGCTTCAGCCTCACCACTGAGACAGGGCCTTGTGGATCTGAGGCCAATGGCACCAAGGCCATCTTCCATCTGCAGGACGCCATTGACTACAGTCGCTGGAGTGTTGCAGCATCCTGCCATTCAGGAAATGAAGTGGAATTGTCCATTTGCTCCCCACCTGATGCCCCCATTGGCAAATACTCCCTAACCATGACCCAGGATTATAGGACCATCAATGTAGGGGAGTTTGTACTGCTCTTTAACCCCTGGTGCCCTGCGGATGCTGTGTACATGCCGGAAACTGAGAAGCTGAATGAATATATTCTGGCCCAGGACGGTATCATTTTCCGAGGCAATCATAAATATCCTGTCTCAGATGCATGGAACTTTGGACAGTTTGCACCTCGGATACTGGACATCTGTTTGCGCATTTTGGACACGAACCCCAAATTCTTAAGGAAACCAGAGATGGACTGCTCAGGCAGGAGGAACCCTGTGTATGTGACTAGGGTGGTGAGTGCAATGATAAACTGCAATGATGACAAGGGGGTCCTTTTTGGCAGATGGCAAGATGACTATGCTGATGGTGTAAGTCCCAGTAGCTGGACTGGCAGCGTGGATATTTTGCACTGCTGGGACTCTAAGTCCTGCCAGCCTGTTCGCTATGGACAGTGTTGGGTGTTTGCTGCTGTTGCCTGCACAGTGTTGCGAGCTCTAGGAATCCCTACTCGAGTGGTCACCAATTTCCTGTCTGCTCATGACACAAATGCCAACCTGGTCATCGAGCGCTACTATGATGAAAATGGCCAATCACAAAAAAACTCCGGCGATATGATATGGAACTACCATTGTTGGGTTGAGAGCTGGATGAATCGTCCTGATCTTAAAGCAGGCTTCGATGGGTGGCAAGCCAGTGACCCCACTCCTCAGGAGAAAAGTGAAGGAGTCTACTGTTGTGGACCTGTTCCCCTAAAAGCCATCAAGGAGGGTGAGCTCAAATTGAAGTATGATGTGCCCTTCGTTTTCGCGGAGGTAAATGCAGATGTGGTCACCTATATAAAGCGCAAAGATGGCACCCAAGACAAGGTGAAGGACCACAGTCAGGTCGGAGTGAAAATCAGCACGAAAAGTGTGGGCAGTGACAAAAGGGAAGACATCACCCACCTGTACAAGTACCCTGAAGGCTCAAAGGAAGAGAGACAGGTGTTCATGAAGGCCAACCACCAGAACAAGCTGCTGGACGAACCCCAGGAGCCAGGCCTGGACCTCAAGATCAAGGTTTCTCCCAACATGAAGAAGGTAGGGGTGCCTACTACAATGGTACTACTTTTGGAGCTGAGTGTGGCAAGAAGGACTTGCTCAACCTGCAGCTCTCCCCTGATGAAGTATGGTTCTGCCATTACAAAGGACAATCTGATCAAGCTTGTGGCTCTGCTGATTGAATATCAGACCAACGATACTAAGTTGATCCTGGGTGAACCAAAGCAGAACCGTAAGCTGGCAGCTGAGATCACGCTGCAGAACCCCCTGTCAGAGCCCCTGGACAACTGCTCGTTCTGTGTGGAGGGAGCAGACCTCACCGGTGGCCGAACAATCAAGAAAACGATCAAGTCAGTGGGACCTGGCCAAGAGGCAAAAATGAAAGTAGATTTAACCCCTACTCAGGGGGGTGTCAGAAAGCTGGTGGTGGATTTTAACAGCACTAAACTGCATGACGTCAAGGGATACAGAAACGTCATCATCAGCAAATAGTTTGAATTCAATGAGCACTACGATGTCAAATACAATACCTATGTCGTCGGATGCAGGAagcacaaaaaaatgtattttttttaaatatgttttatatttttattcttttaggCTAGATTAAAATAAGATAATACATAAGATGTATCTAAAGATAAAGTTGTACCAATGGTTATTGGCATGGCAAAAATGCTAAAGCTTTGTAACACACTCTCACTTTTACAGCCAAAACTTGCCTTTAAAAGTACAAGTCTTAAGAATTAAACCCTGTGACCACATTCCCTGCTCTTATCAAACACGTGTGATGTGATGAGTTTATCAGACTGCATGACACAGCAGCGTGTACTAAAGGCAACCTAAAGGTCTTTTAATGCTTGGCTCGCTGATAAGATAGCTGTATGTGCTGTTAGAAATGCCCTACTagaaatgttatattgtttataGATACAGATATCACAGCAAGGGAATCATAAGAGTGCCAGATAGATGAtacaatattatactatattatatcaTGCTTCACTACATTCTTACTAAAACATGTAAAGCACATTGAATATATAGGGTgctacagtaaaacaaatgtgaaacattTCTTCCTTTTGTGGATCATgtgaaatggttttattataggattatcattttatttccacatCTGTATGATGTTTTAGGAAGATCGTTCATGGATTGTCCAATTAACCTTAGAGAAAGGTCTCTACAGCACCGGCCTTCCGGCAGCTAtccataaatacaataattacattaaagatGCTTTGgcatatatacaaatgtgtatgTGAATGATAAAGGAAATCTACAGACTATTACAAATGTTCTctcctttgttttttattatttctttgcttCTTGTATAATTTCTTTTTAAGAGAATTAGTGTTCAAATATTATAGTACACCCATCCCACTGTCAAGAACCCATGAAAAAGAGCCTTCTGCTGTAAGAAAAAGATGCAACTAATTGAATTTAACTGTAGACGTGGATTGTGATGGAGAGATAACACTCACGATTGCATTCAGTGTTGCTCAAAAAGATGCCATGTAAAGGAAACCATACATTAATCTAAACATACAAACCCAGAGCTGCATCCTGCCCAGATGCATTTTTATCCTTGTTGACAGTGAACAATCAAGTTACTGTTGCAAAAGTCATGTCAAGAAACCTATtcaactacatttaaaatggtgTGTACATTTCAGTCCTTATGTGCAAGCCTGTCAGcaaatgtaatgaatgttaACCATATTACAAACCAAAGACaatgacaataaattaataatcattaaaaggCTGATTTGTCTCAGATTTTTTGTATCAAAGGTCTGGAATATCTAGTTGAGATGTCAA

Function

GO: NA

KEGG:

id description
K05625 TGM2; transglutaminase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008220 True 3341 mRNA 0.43 14 46077307 46090993

Neighbor

gene id symbol gene type direction distance location
AMCG00008219 NA coding upstream 8489 46039948 ~ 46068818 (+)
AMCG00008218 NA coding upstream 165700 45867343 ~ 45911607 (+)
AMCG00008212 myl9,LOC106565219,LOC103045271,LOC101062217,LOC100697131 coding upstream 363264 45708568 ~ 45714043 (+)
AMCG00008211 NA coding upstream 438518 45599200 ~ 45638789 (+)
AMCG00008210 NA coding upstream 588341 45488632 ~ 45488966 (+)
AMCG00008221 LOC102785565 coding downstream 33137 46124130 ~ 46131017 (+)
AMCG00008226 NA coding downstream 439457 46530450 ~ 46530758 (+)
AMCG00008239 NA coding downstream 1710105 47801098 ~ 47813090 (+)
AMCG00008243 slc35c2,LOC105890624 coding downstream 1804925 47895918 ~ 47908312 (+)
AMCG00008248 NA coding downstream 1864041 47955034 ~ 48001940 (+)
G29291 NA non-coding upstream 188895 45887949 ~ 45888412 (+)
G29271 NA non-coding upstream 343046 45725983 ~ 45734261 (+)
G29223 NA non-coding upstream 535101 45539769 ~ 45542206 (+)
G29153 NA non-coding upstream 698954 45378011 ~ 45378353 (+)
G29148 NA non-coding upstream 723228 45353716 ~ 45354079 (+)
G29320 NA non-coding downstream 1915 46092908 ~ 46093489 (+)
G29355 NA non-coding downstream 177682 46268675 ~ 46268989 (+)
G29358 NA non-coding downstream 387499 46478492 ~ 46478774 (+)
G29368 NA non-coding downstream 419391 46510384 ~ 46531909 (+)
G29372 NA non-coding downstream 443974 46534967 ~ 46535184 (+)
G29183 NA other upstream 636243 45440513 ~ 45441064 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other upstream 733393 45340574 ~ 45343914 (+)
AMCG00008185 NA other upstream 905479 45147397 ~ 45171828 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other upstream 1040891 45023148 ~ 45036416 (+)
AMCG00008132 NA other upstream 2771777 43292596 ~ 43305530 (+)
G29353 NA other downstream 176898 46267891 ~ 46268327 (+)
G29418 NA other downstream 1489220 47580213 ~ 47586235 (+)
G29421 NA other downstream 1504111 47595104 ~ 47595686 (+)
AMCG00008232 ddx27 other downstream 1531959 47622952 ~ 47671421 (+)
AMCG00008238 hsp70l,hsp70.3,LOC105896343,LOC105896344 other downstream 1573524 47664517 ~ 47716582 (+)

Expression


Co-expression Network