AMCG00008221 (LOC102785565)


Basic Information

Item Value
gene id AMCG00008221
gene name LOC102785565
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 46124130 ~ 46131017 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008221
TGACGTAGTTCAAAGTGGCAAGGTTCTAGCAGCAGCACTGTAGTGAGCCCATGCTGGCAGTGCTCGCAACGCTAGGGCTCACCGTGGGCATGTTACAGTACAAGTAGTGTTTCCGTGCGCTGGAGTGGTTTGCCTAAGCATGGCGTTAACTGATGACCCCAAGGTGGCCTTCGGTGCCCTGCGGCCGGTGTGCGTGCAGCTGACCCGAGAGCAGACGCTGCGCAACGTGGAGCAGCTCCGCGCGCAGCTGCAGGGGGTGAGCGAGGCAGCACTGCAGCAGTTGCAGGACTACGTGCTCTTCCCTCTGCGCTTCGTCCTCAAGACCCCAGCCTCCAAGAAAGAGCGTCTGATCCAGGCCGTGGTGGAGTGCATCGGCTATGTCCTCGCCAACACCTGCGTGCAGAAGTGGGACCTGCTGCGCGACCTCTTCTCCGAgctctgcctctgtctctgctCCCCAACAGATCCAGGCAAGCCTGCTCCCGTTTCGGACGAACTGAAAACGGCTGTTCTCCAAAGCTTGGATGCCCTCTTGCATGCAGCGTACGGGGACATCCTCCCTCGGCTGTATGAGCCCGTCATGCTGCCTGGTTTGGGCCTCGCCATCTCCCTGCTTTTAGAGCTGGCAGAGCGGGAGAAGTCAAGACAAGTTCAGGCAGTAGCCCTCAAGTGCCTCCAAGTTCTCCTTCTCCAGTGCAACTGCCCAGAGGGACACTGGTCAATGAACCAGGAGGAGAAATGGAAGATGGGGAGCACTTTCGCCTCCTTCTTACCCGGGATCAGCCGTGGCTTGTCTAGGGTCATCACGGGTGATATGAAACAAGGGCACGTTGTGGCAGTGAGCGCGATGAGAGTCTGGTATAAGACGGTAGGCCTGGTGATGGCTGACGAGCAGCTCTCCGACAACAAGGTCAGGGAGAAACCGGCAGCTGAGCTGGGGAGAGTCGGGGAGCTGATGGTGCAGAGGACGCCAGACTGGGCTAAGGACACTTCAGGAAAACTGGCTATACATTTAAAGAAGATTATTGCTTGCACTTCAGCTCACCAGCATTGGAAAGTCAGGCTAGAGCTGGTGGACTTTTCAAACCACCTCCTTTGTAGTTGTCACAGTTCTTTGGGGGAATGTATCGGCCCCCTTCTGGAGGCTCTGGTGGGTCTGGTGAACGATGAAAATCAAACGGTCCGGGAATGGTGCGATAAAGCTTTAAAGCGAATAGCCCAGCAGAATTTGACAGGTGGGAACCGGACACTTACAGACGTTCTATCTGAGAACCTGCATTCCCTCACCACGGCCCTGCCACGCCTGATTAGAACATCAGATGACCAGCACAAGTTGTCCACTCTGAATGTGTTCCTAGGTTACCTGAAGATGCTGGGGCCGCAGGTGGCAATGGTGCTCAACTCGGCGGCTCACCTGCAGCGGATCTCCAAAGCACTGATGCAGGTTTTGGAGCTGGATGTGACTGATGTCCGAATTGTGGAGGGGAAAAGCTCTGGGATCACAGATGAATCGGCGGCCTTGCTTTTCCAAACGAGGCCTCAGAGAAAGCACTTCCAGTATTTCACGGACGATCAGATATTCTCCCTGCTTCGGCACATCTGCAGGGTGCTCGGCTACTTTGGAAACCTCTATCTCTTAGTGGACCACTTTATGGACCTTTATCGGGAGTCATTAGTCTACAGAAAGCAGGCCGCCTTGGTTCTCAATGAAATCATCAAAGGAGCCGCTGGCATTGATGTGGAGGTGACTGAAGAGCAATGCCCAGCAAGCCACGATGATCTAATGGCAGCAGTAACTTCCATCATCGAAGAATATACCAGCCTGTGCAATTGGCATTTAACTACCTCTCATGAGGAATCTGAGAAAGGAGACTCTTTTGGGCAGCCTACAGTGCTGTCCATTATGAACAATGCTCAAGGAGGTTGTCTCCAGGTTACTTCGGCGAGCAAAGTATCAACAATTCGTCAGATGAACAGCAACATCTGGCAGGTTTGCATCCAGCTGGAAGGGATTGGCTGTTTTGCTCTTGCTCTGCGGACGGAGTTTCACCTGCTCTTGATCACGACGCTGTACCCTGTGTTGGAGAAGGCTGGGGATGAAAGCTTGCTGATAAGCCAGTCCGCTGTGGACGCCATGAGGAACATCTGCACTGCTTGTGGCTACGGCTCTTTCAAGGACCTCATCAACCAAAACTCGGACTACCTGGTCAACGACATCTCCCTCAATCTGCAGCGGCTGAGCCGGCACCCCCACACTCCCTGTGTCCTGAGCGTCATGTTCACTTACTCAGATGCCAGCTTGCTCCCGCTAGTAGGAGACATTATCCAAGATGTGCTGATGGCCTTGGACCACTGCTACGATGAGAGAGCGCCCATGTTTTGCACAGTCCTGCATTCACTCATGAAGGCATTAGCAAGGTGGTTCCCGACCgagaaaaggaaaatgagtGAATCGGACCCAGGAGTTATGAAGGACGCTGCGGGGGACGGGAAGGGCTTGTTGGATGTGAAGCAGTTTCTCGTGGACTACCGCCGACAGAAAGAGCTGGCGGAGGGCAATTTTGCGGACGAAGAGGATATCAGCGATACAGAAGTGCCTCTGACTGCCCCTGAGCCTGACGTAGATATGGAAGCCCCCGATGTGAAAGCTGCTCTCCCGTCTCACATCACCATAGCCAAGGAGGTGATGGAGAGGAGTATCCATCTGCTCTCAGACCCCAGTCTGCGGCTCAGGCTCAAGgTGCTGGATGTGCTGGAGTTGTGCGTCAGGGTGCTGCAGGGCGACGAGAGGGAACTCCTTCCGATGGTGCATCGTGCCTGGCCCCCCCTCCTCGTCAGACTCACGAACGATGACCCCCTGGCAGTGCTCCGAGCTTTCCAGGTGCTGTGTACCCTGGGAGAAACCTGTGGGGATTTCCTCAGGAGGAGAGTGTCTAAAGACGTGCTCCCACGCCTCACTGCCTCCTTAGTGAAGCAGGCCCCGCTCAGTGCCAAGGCTGGACCCATCTTCACCCACACGCTGGCCTACAAGCTGCAGCTGGCCGTACTGGAGGGGCTGGGGGATCTGTGTCTCCGACTGGATCTAGACTTGCACACGCTGCTGCTGAGTGGCATGGGGAAACAGAGGAATGAATTCACTGACAACATCCTCAAGCTTCTGGAGTTGATAGCGTGA

Function

NR:

description
PREDICTED: TELO2-interacting protein 1 homolog

GO: NA

KEGG:

id description
K20403 TTI1; TELO2-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008221 True 3175 mRNA 0.55 7 46124130 46131017

Neighbor

gene id symbol gene type direction distance location
AMCG00008220 NA coding upstream 33137 46077307 ~ 46090993 (+)
AMCG00008219 NA coding upstream 55312 46039948 ~ 46068818 (+)
AMCG00008218 NA coding upstream 212523 45867343 ~ 45911607 (+)
AMCG00008212 myl9,LOC106565219,LOC103045271,LOC101062217,LOC100697131 coding upstream 410087 45708568 ~ 45714043 (+)
AMCG00008211 NA coding upstream 485341 45599200 ~ 45638789 (+)
AMCG00008226 NA coding downstream 399433 46530450 ~ 46530758 (+)
AMCG00008239 NA coding downstream 1670081 47801098 ~ 47813090 (+)
AMCG00008243 slc35c2,LOC105890624 coding downstream 1764901 47895918 ~ 47908312 (+)
AMCG00008248 NA coding downstream 1824017 47955034 ~ 48001940 (+)
AMCG00008247 LOC107565828 coding downstream 1884083 48015100 ~ 48030729 (+)
G29320 NA non-coding upstream 30641 46092908 ~ 46093489 (+)
G29291 NA non-coding upstream 235718 45887949 ~ 45888412 (+)
G29271 NA non-coding upstream 389869 45725983 ~ 45734261 (+)
G29223 NA non-coding upstream 581924 45539769 ~ 45542206 (+)
G29153 NA non-coding upstream 745777 45378011 ~ 45378353 (+)
G29355 NA non-coding downstream 137658 46268675 ~ 46268989 (+)
G29358 NA non-coding downstream 347475 46478492 ~ 46478774 (+)
G29368 NA non-coding downstream 379367 46510384 ~ 46531909 (+)
G29372 NA non-coding downstream 403950 46534967 ~ 46535184 (+)
G29376 NA non-coding downstream 592616 46723633 ~ 46723895 (+)
G29183 NA other upstream 683066 45440513 ~ 45441064 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other upstream 780216 45340574 ~ 45343914 (+)
AMCG00008185 NA other upstream 952302 45147397 ~ 45171828 (+)
AMCG00008177 rbm38,LOC101475440,LOC103365886,LOC105906784 other upstream 1087714 45023148 ~ 45036416 (+)
AMCG00008132 NA other upstream 2818600 43292596 ~ 43305530 (+)
G29353 NA other downstream 136874 46267891 ~ 46268327 (+)
G29418 NA other downstream 1449196 47580213 ~ 47586235 (+)
G29421 NA other downstream 1464087 47595104 ~ 47595686 (+)
AMCG00008232 ddx27 other downstream 1491935 47622952 ~ 47671421 (+)
AMCG00008238 hsp70l,hsp70.3,LOC105896343,LOC105896344 other downstream 1533500 47664517 ~ 47716582 (+)

Expression


Co-expression Network