AMCG00008222


Basic Information

Item Value
gene id AMCG00008222
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 46111936 ~ 46123767 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008222
TCTATGAACTGTGGGTAAAAGGTCACACGGCCATCTTGTTGGCAACAGATCcaggtgtttgtttttactactACAACATAACATTACAGTTTGGAAACTCAAGTGGGATATCGGGGCAAACGGCGAGCACAGGGGCAGCTCGGAGAAGACTGAGAATGAGGTGTTTGTATAAATGTGGCGTGTAATCGATATATTATGATCGGAAGTTTGCCAGTTTATCCCAAATCATACGTATGGTAGCCTGAAGAGCCCCCTTCGTAACAGGCTGTTATGTGGGCAAGAGTTGTTTAGAGTAAGATTGTAAATGTCTTGTACAGGTCAATCGGACGCAAGGCGGATTTGCGGTTAGAAAACCAGTGCATATTGAAAACCAGTGCATTTTGCGTAACTTTAAAGTTTGTTCCTGGTTTTCCGAGAAGCGGTGTTGTTTTTGCATCAGCAGAGTAACTACTGAACACATTGTCTATGTTTTGTCGATGCATTTCGATCATTCACTAAACCACCTGAGCTTTAAAAAGTAGAAAAGGGAGTTTTAGGTCCTCTAAAGTGAACTGGAGGGACCATCCTGCCAGGATCCCTGCTTCACCGGAGCCTGGACTCAACTTAGTTTGATGCAGCGTGTAGTCTACTGATAACACACTAGCTGTGTAGTGTGCGACCTGATCACACAGTTCACCTCAGACGGATCCACGAGTGGAGGAGACATGTCGTCCTTTTCCGAGTCTGCGCTGGAGAAGAAGTTGTCGGAGCTGAGTAACTCCCAGCAGAGTGTGCAGACCCTGTCCCTGTGGATCATCCATCACAGAAAGCACTCGTCTCTTATTGTGCACGTCTGGCACAGGGAAATGAAGAAAGCCAAAAGCAACAGGAAGTTGACCTTCCTGTACCTAGCCAATGATGTTATCCAGAACAGCAAGAGGAAAGGACCCGAATTTACCAAGGATTTTGAGACCGTCCTGGTCGATGCCTGCTCCCATGTAGCTAGAGAAGCAGATGACGGGTGTAAGAAACACCTGGAACGGTTGCTCAACATCTGGCAGGAGCGCAGCGTATACGGGGCCGACTTCATCCAGCAGCTCAAGCTGGCCATCGAGGACTCCAACAGCCCCAAACAGAAACCGCAGGGTAAGCAGGCAGGAGGCAGACGAGCAAAACACTCCCAACCAGAGCGCTTCAAAGCAGTACAGGCAGTAAAAAATCAGCGCAAACCAAGCCGGAAGAAGGTTGAAGAAGTGGAGGAGAAGAAAGCCACCAAACGCACCTACCAGAAAAttcaggaggaagaggaggaggaagatgacgATTACAGGGGACACTACTCTCCACAGGAAAACGATGTTAGCGGGCCATTGCTGACCGAGGAACTGATTAAGGCCCTACAGGACCTGGAGAACGCAGCCTCTGGAGATGCGGCCGTTCGCCAGAAGATAGCCTCGCTTCCCCAGGAGGTGCAGGACGTCTCCTTGCTGGAGAAAATCACAGACAAGGAGGCTGCGGAAAAGTTGTCGAAGACAGTGGACGAGGCCTGCCTCCTGCTGGCCGAGTATAACGGGCGACTGGCTGCTGAGCTGGAGGACCGGAGACAGCTGGCCCGCATGCTTACAGAGTACATCCACAACCAGAAGGAGGAGTACAAACAGAAACTGGCACGGGTGACGCAAGTCCGAAAGGAGCTGAAATCGCACATCCAGAGCCTGCCTGACCTCTCGCTGCTGCCCAACGTCACAGGCGGCCTGGCACCACTGCCCTCCGCTGGTGACCTTTTCTCCACTGACTGAGGAGGACCTGTCCATTTGAGTTCCTTTCCCTTAGAGGAGTCCCCCGCTGGTGGCTCCAGGTGGAAGCTGTGACAGGGCTTTTATTATGACTGAGGCAGTCGCTCCTGGAGGGCCACAATCGCTAGAGGGTCAATAGCCTGGAAAACTCACAACCGGGGGCCCTTCCGTAGAAAACCAGGGAGAATTTCCACCGAGGGGCGTTTCAGTTCCTCTGAGGGAAAGGGGGATTACAGACTATGATTCCTGCTTCACCAGcttgaaaactggaaaaacaaaacaaaaaatctaccTTGAGCAGCCTGGAGAAtagttttatctttattttatatgaaaaaaaaaaaaaaaaaaaagtcctcctcccccccccccc

Function

GO: NA

KEGG:

id description
K15559 RTT103; regulator of Ty1 transposition protein 103

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008222 True 2148 mRNA 0.50 8 46111936 46123767

Neighbor

gene id symbol gene type direction distance location
AMCG00008216 NA coding downstream 324955 45777462 ~ 45786981 (-)
AMCG00008214 NA coding downstream 351154 45737488 ~ 45760782 (-)
AMCG00008213 NA coding downstream 387509 45717392 ~ 45724427 (-)
AMCG00008215 lpin2 coding downstream 449589 45645248 ~ 45662347 (-)
AMCG00008217 NA coding downstream 470133 45640286 ~ 45641803 (-)
AMCG00008223 NA coding upstream 13981 46137748 ~ 46150163 (-)
AMCG00008224 ctnnbl1,LOC106566902 coding upstream 77025 46200792 ~ 46234987 (-)
AMCG00008225 ctnnbl1 coding upstream 111236 46235003 ~ 46238529 (-)
AMCG00008228 NA coding upstream 623426 46747193 ~ 46747558 (-)
AMCG00008229 cdh22,LOC106565306,LOC107553911 coding upstream 834098 46957865 ~ 46964572 (-)
G29294 NA non-coding downstream 132468 45979260 ~ 45979468 (-)
G29284 NA non-coding downstream 317985 45793678 ~ 45793951 (-)
G29249 NA non-coding downstream 397899 45599559 ~ 45714037 (-)
G29206 NA non-coding downstream 621046 45490007 ~ 45490890 (-)
G29192 NA non-coding downstream 649406 45461779 ~ 45462530 (-)
G29348 NA non-coding upstream 126896 46250663 ~ 46251181 (-)
G29354 NA non-coding upstream 144126 46267893 ~ 46268278 (-)
G29375 NA non-coding upstream 532467 46656234 ~ 46656566 (-)
G29377 NA non-coding upstream 599866 46723633 ~ 46723895 (-)
G29381 NA non-coding upstream 780025 46903792 ~ 46904222 (-)
G29301 NA other downstream 57590 46050695 ~ 46054346 (-)
AMCG00008192 NA other downstream 883432 45149501 ~ 45228504 (-)
G28970 NA other downstream 1693740 44417874 ~ 44418196 (-)
AMCG00008144 phf20,LOC107727854 other downstream 2528523 43510760 ~ 43583413 (-)
AMCG00008124 LOC105922603,LOC105919618,LOC103147358,LOC106964922,LOC102223196,LOC103465560,LOC107100266,LOC108244412 other downstream 2991772 43097111 ~ 43120164 (-)
G29361 NA other upstream 357179 46480946 ~ 46481898 (-)
AMCG00008233 NA other upstream 1456372 47580139 ~ 47607012 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other upstream 1542875 47666642 ~ 47918462 (-)
G29544 LOC100846954 other upstream 2000158 48123925 ~ 48124682 (-)
AMCG00008256 arfgef2 other upstream 2078854 48202621 ~ 48291443 (-)

Expression


Co-expression Network