AMCG00008232 (ddx27)


Basic Information

Item Value
gene id AMCG00008232
gene name ddx27
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47622952 ~ 47671421 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008232
AAAGCTCCCACCACCCTGGATGAGAAGATTGACAAAGTCCGCAAAAAACGCCGCACAGAGGAGAGAACATCGAAAGAGGGGAAAAAGGCTGCAGAGACAGAGGACACTGTGAAGGCGGAGGAAAAAGAGGACGaggacgatgatgatgatgatgatgaggaggtgggggaggaggaggagggagagggcgCAAGTGATGAGAGTGGAAGTGAGGAAGAGGGCGATGAATTTTCTTCAGCTGATGAGGAGGTGCTGACCAAAGCAGATACACTGAGAGACAAagagaggagaaggaagaggaagCCTGACCAGGAGACCCCTGAGGCCTTTTTCGAGGACGCCTCCCAGTATGACGACAAGCTCACCTTCCCGGATATGAACCTGTCCCGGCCGCTGCTCAAGGCCATCACTGCTATGGGGTTCAAGCAGCCTACGCCCATTCAGAAGGCCTGTGTGCCTGTGGGGCTCCTGGGAAAGGACATCTGTGCCTGCGCTGCCACTGGCACTGgtAAGACGGCTGCCTTCATGCTGCCAGTTCTGGAGCGTCTGATCTACAAGCCCAGGCAGGCCCCGGTGACCCGAGTCCTGGTCCTGGTTCCGACCCGTGAGTTGGGCATCCAGGTGCACACAGTGGCCCGGCAGCTGGCCCAGTTCTCCAGTATCACCACCTGTCTGGCTGGACACGGTGAGACGGAGACCATGCTGTCGGACCTGGACTTGATCGGAACCATCCAGGACGAAGACGACGTGCCGGAGGAGCCGGACTCCGAGTCCGAAGACGATGCGGAGCAGCCCATCGTCCTGGGACGGAAGAGGCAGGCTCTGCAGGCGCACGGCAAGGGGGACTTCTGCACTGACTTTGAGTTTGGGGAGCGGGATGGCCTGTACAGTGAGGACTGGGCTATGGCGGACGTGATGGCTCAGCTGAAGAagaggGAGGTGGTGGTCTCATTCCTGGAGGGGGCATTCCCATGGGGGCACCACGACCAGGCGGCATGCCCATTGGGGGACCCATGGGTGGCCGCATGCCTGGGGGAGGACCCATCATACCTGCAGGAGGAAAGACCAGAGTTTTAA
>TU36868
TGTGCGCAGACGGGGACGGAGCTGCTCGTCCGGCGCTGTGGACGAGAGACGGGGTTGCAGTGTAGCACCGGGTCTGCTCATACAGCGCTCACTTAAACCTACTCTCGGCGAAACGATTCAGTATATGTCAATACCTGGAGTACAGCGTTGTTACAGAGAGCAACACTAAATTAAACTTTGCCTGCCAGTTTGAAAGTTAACATTTGAAGTTGTATTACGCTGAATTCAGCATAACGGCTGTTAGGGACACGGTGAGACGGAGACCATGCTGTCGGACCTGGACTTGATCGGAACCATCCAGGACGAAGACGACGTGCCGGAGGAGCCGGACTCCGAGTCCGAAGACGATGCGGAGCAGCCCATCGTCCTGGGACGGAAGAGGCAGGCTCTGCAGGCGCACGGCAAGGGGGACTTCTGCACTGACTTTGAGTTTGGGGAGCGGGATGGCCTGTACAGTGAGGACTGGGCTATGGCGGACGTGATGGCTCAGCTGAAGAagaggTCAGCTCCCAtcaccctggat
>TU36872
tattctcaAAAGTGTAACTTAATTACTGCATCTGTTTAAAGTAGTGCAATACaaatcatagccaaaacacaatgtaggatttgaaagttttataaatatccagtatagtttcagttttattctgtattcattttcattagatTACTCTCTGTGATCGGAGACTGcttgtcattttgtttattaacatCCAGTcaacatttacaaacataccatttttcttttagttaattttgaaaagcaatttaatcattttaataaaacatttattgatttataagcCCCACTCCTCAATGGGCGTGCGTTTCAGTGTTCAACGCCACTGTGCAGAAAATCACTGGATTAAGGCTGAAGTCTGACTAAGgattttacagtaatttgaaaaatattaagcCAGTAGTTGcagaatgtgtgtgttattgGTGGAATGTGCCGATACAGATTTCTGTAGAAGGTCAAATCAGCCAATAGTCTGTGCCCCGATCCGTCGGGCCCCATTTAGGACTTTCTGCCTTCTCGAGAGTTTTACCATAATATGCAAAACTTGTCAAATGCATGTTTCCATATATTCTACAATTCCAATAACCAGATACTAATCTGAAACTAGAGATTAATAGTTCATTTGAATtaagtttttaaattttaacaGAGTATTGGAAGACAAAATGTCAGTGACCATGTGCCAATGAATGATCAGTTACCAGATCCCCTTGGCATCTAGAGTTGAGCAATTCATTTAATCTTACCAGTGTTGAAGATCACAGAGCTACTTCATAACTAGACTTCACAGTAGTGCAAGTCATTTTATTCAGGTTTCCTTCACCAGCTAGTAGTTGTAGTTTTCTAAAGTAGAAGCAACAACTATACAAGCTCTGATGCAGAGTGAGGAACACCTGTCTGCCACCAGAACTGCagattaaaagaacaaaactttGTAAAGAAGTCTAAAAGAccaggtttatttaaaaaatattacaccaaaaatacaaaacaaactatacaaGAGCTTGACTTGTGAAGCAGACTCCGGAAGATGGGGCCGACATCTGAGGTCAAGTGACGTCTGGAAAGAGGGCTCAGGGTCTGGGGGGGCGCATTCCCGGAGGAGGAGGGCCTGAGGAAAGATGCGTTATAAAAAGGAGTCCGTATGGGAAAGCAGTGGAGCACAGCAGAGCTCAGTTCACTGCCCTGAAACAGCCTTACTTGCCAACCCTAAAGAACAGTTCAACACTAAAGCCAAATGAGCTCCCTGAGGCCACATTAAGAGTTACATTAGTTATCAATGCAATGCTACTCTGCATGTGGACCTTACCTCTCATCCCAGGAGGTGGTGGTCTCATTCCTGGAGGGGGCATTCCCATGGGGGCACCACGACCAGGCGGCATGCCCATTGGGGGACCCATGGGTGGCCGCATGCCTGGGGGAGGACCCATCATACCTGCAGGAGGAAAGACCAGAGTTTTAAAAAGCTGCCAACAGAATAGATGCCTTTTAGTTCACATCCTAACAAATGGTGCAGTTTTGTTGGCTAAAATCAACTCAGAAGGAGCTCAGTCTGCAAAGCTGAGGAAGATAAATGAATCACCCCCTCTATACACCCCTGTCAGAACAAACCCTTTCCCCTGCAAGACCACTCTGCAGGACAAACCCATCTGACTGCTTTGCACAATGGGAAGCCGGCATCTATACCATTCTCAGTCATGGTATTGTTTCCCAGGCAATCATCTTTTCCACAAGCCAGAATTAAAGTGTCGCAGTGAGTAGAGGGCGTCTACAACAGAAGGACTGTAATCCAGCTGACAGACCGGAGCTCAGAGTAATCCTGCTTCAATAAGCTTCAGCATCATGCTCAGCTCTAGACTGAAAGTCATCACTGCTCCAGCCACCAAGCACTGAAAGACCTGCACTCAACTGCTGACCTCcatttaaagctttaaaggTCGCAGGATTAGATCCCTATATAGGATATAGTTGAAGGAGTAAGGCTTGGCAATTATTCTGTGGACAAGTGTTCAGGTAGGAGAATTCTGCAGGATGTGCCCTGGAATACAGGGACAACCAAGGTACAGGCAACTACACCTCAAAAACAACTTTGCGATTAAACTGATGCCCTGCAGTTTCTAGCAGACTCACATCTTTGGGAGGAGGGCCTTCCACGGTCATTGACACCAGGTTCTCTCCTCTGAGCAGCACCAGGCCCAGCACACGCTTCTCCTCTCGCTCCGGCTGCTTGGAGTTCTTGGGCCTAAGAAGGATTTCCAAGGTCAGTGGTGAGCAAAACCGGCAGAGCACGCTCCTTTACACAACACACTGTGCCACAAAGCATCACAGCTGAAACTGATGATTAGCCAATGCttaacatgcatatatattacagttattCTAGATGGGTACACAGGACAGTAGGGCTGCAGCTCAGAGTAATCCTGCTTCAAAAAGCTTCAACATTAGGCtctgtttaaaattgaaaatcatCACCACTCCAGCCCACTGCTGATAGGACAAGAATATTCTAGCCAGGTAAGCCACCGGTGCTTTAAGTGTCCACTGGATTTAAAAACTTCCCAAAAAATTCCCCCTTCTGAATAACACAACAGGAACTTATTTTGAGCCCCGCTGCTGTCTGGAGGGAGCCGGGTGCACAGCCGCACTACGCCCCGGACTCTTACTTGATCTTCCTGAACTCGTCGCAGTCGCACAGGATGAGGTTCATGTGCTTGTCGAAGGCCTTGAAGGTGCCGATGAAGATGCGCCCGTCCTGCAGGATACAGCGCATCCTGTAGTCGATGTGCTGCAGCATCTTACTGCTCTTCCCCACCGTCTAGGGAGGACAAGACACATCCGGGTCACACACAAACCGGGGCGAAGGAGAAACATCTGAGCCTCAAGGCCTCTCAAAACACGTCCAAAACAACCCAAACCCCACCCCAACAACGAAGGCCTAGTACATGCATTCGAGGAGAATTTACAAGCTTACCAATGCGGAGAAATGCCAAATCACACCCAGGGTCACATTAAAGGTATATTACAGGCTACTACGGAGAGCCATTTTAACGACCCCCACCGTATGCCTAGCTATACCCCGCGTAAACGCAAACAGCGGCAGTGTGTGCGTGCACTGCAGCAGCGTAAAACATTGAGCTTTTACCAAATTTTACAGCAAGAATGAAATATTACTAAagctaattataattaatactcTTTAGAGTTCACTTAAACCAACAATAGTCCAAACAAGGCGTGCTGGCGCATTAATAACGTTACTGTACTAATGCACGTTTATTTTCGTGCGATTAAAAGCCTCCTCGATAATCACAGCCTCGTAGTTCTCCTTAAAGCCATGCGGGCTGAAACACGAGTTACAGCCCGGAACAAACGAGCGGGGTTTGGGACCGGCCTGCTCGCCGGCCAACTTGTCCTcctttttaacaaacacacattctttAACAAACACATCATTCCCAATATCAATAACCCGTCTTTCGAGGAAAAGGGTTCAAAGAGTCTCACCATGATTGCGTTTGTGATGGCTCCGATTCAGATCGGATTatgccaaacaaaaaaaaattgacccGCGGAGCTACTGCGCCGCCAGGACCGTCTTTTAGAGGCAGACAGAGCGGAAGTGTGCGACCGGCGCAGAGACCGGCTAGAAACAAGTGCCACAGCACcgttcctccctccctccacagaCACATAATTTAATCATTG

Function

symbol description
ddx27 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Acts upstream of or within rRNA processing. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; brain; digestive system; musculature system; and retina. Orthologous to human DDX27 (DEAD-box helicase 27).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008232 False 1077 mRNA 0.59 9 47622952 47633651
TU36868 False 523 TUCP 0.56 4 47627296 47671421
TU36872 True 3708 TUCP 0.45 2 47632190 47637376

Neighbor

gene id symbol gene type direction distance location
AMCG00008226 NA coding upstream 1092194 46530450 ~ 46530758 (+)
AMCG00008221 LOC102785565 coding upstream 1491935 46124130 ~ 46131017 (+)
AMCG00008220 NA coding upstream 1531959 46077307 ~ 46090993 (+)
AMCG00008219 NA coding upstream 1554134 46039948 ~ 46068818 (+)
AMCG00008218 NA coding upstream 1711345 45867343 ~ 45911607 (+)
AMCG00008239 NA coding downstream 129677 47801098 ~ 47813090 (+)
AMCG00008243 slc35c2,LOC105890624 coding downstream 224497 47895918 ~ 47908312 (+)
AMCG00008248 NA coding downstream 283613 47955034 ~ 48001940 (+)
AMCG00008247 LOC107565828 coding downstream 343679 48015100 ~ 48030729 (+)
AMCG00008246 NA coding downstream 371325 48042746 ~ 48067543 (+)
G29431 NA non-coding upstream 7021 47613501 ~ 47615931 (+)
G29425 NA non-coding upstream 16527 47605140 ~ 47606425 (+)
G29424 NA non-coding upstream 20266 47602218 ~ 47602686 (+)
G29423 NA non-coding upstream 21851 47600820 ~ 47601101 (+)
G29422 NA non-coding upstream 23484 47599234 ~ 47599468 (+)
G29546 NA non-coding downstream 465048 48136469 ~ 48136724 (+)
G29612 NA non-coding downstream 743582 48415003 ~ 48419063 (+)
G29615 NA non-coding downstream 757554 48428975 ~ 48429218 (+)
G29661 NA non-coding downstream 1002827 48674248 ~ 48676139 (+)
G29675 NA non-coding downstream 1090551 48761972 ~ 48762297 (+)
G29421 NA other upstream 27266 47595104 ~ 47595686 (+)
G29418 NA other upstream 36717 47580213 ~ 47586235 (+)
G29353 NA other upstream 1354625 46267891 ~ 46268327 (+)
G29183 NA other upstream 2181888 45440513 ~ 45441064 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other upstream 2279038 45340574 ~ 45343914 (+)
AMCG00008242 hsp70.2,LOC108441608,LOC105896344,LOC105896343 other downstream 192148 47863569 ~ 47892071 (+)
AMCG00008241 LOC106596195,LOC106601018,LOC105896344,LOC105896343 other downstream 242447 47913868 ~ 47918128 (+)
AMCG00008249 NA other downstream 258246 47929667 ~ 47941754 (+)
AMCG00008263 NA other downstream 1492395 49163816 ~ 49171017 (+)
AMCG00008270 ttpal other downstream 1616825 49288246 ~ 49295359 (+)

Expression


Co-expression Network