AMCG00008238 (hsp70l,hsp70.3,LOC105896343,LOC105896344)


Basic Information

Item Value
gene id AMCG00008238
gene name hsp70l,hsp70.3,LOC105896343,LOC105896344
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47664517 ~ 47716582 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008238
ATGTCTGCACCCAAGGGAGTTTCTATTGGGATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCATGGCAAAGTGGAGATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTGGCCTTCACGGACTCGGAGAGGCTGATTGGAGACGCTGCCAAGAACCAGGTGGCCATGAACCCCAACAACACCATCTTTGATGCCAAGCGCCTGATTGGCAGAAAGTATGACGACTCGGTGGTACAGGCTGATATGAAGCACTGGCCCTTCAAGGTGATCAGCGATGGAGGGAAGCCCAAGGTGGAGGTGGACTACAAAGGAGAGAATAAGACCTTCTACCCAGAGGAGATCTCCTCCATGGTGCTGACCAAGATGAAAGAGATTACGGAGGCGTACCTGGGCCAGAAAGTGTCCAACGCCGTCATCACTGTCCCTGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCCGGAGTGATCGCAGGCCTGAACGTGCTGAGAATCATCAACGAGCCCACAGCGGCCGCCATCGCCTACGGGCTGGACAAGGGCAAGAGAGGAGAGCGCAACGTCTTGATCTTTGACCTGGGCGGCGGCACCTTCGACGTGTCCATCCTGACCATCGAGGATGGCATCTTTGAGGTGAAGGCCACCGCAGGGGACACTCACCTGGGCGGGGAGGACTTTGACAACCGCATGGTCAACCACTTTGTGGAGGAGTTCAAGAGGAAATACAAGAAGGACATCAGTCAGAACAAGAGGGCGCTGCGGAGGCTGCGCACAGCGTGCGAGAGGGCCAAGAGGACCCTGTCCTCCAGCTCCCAGGCCAGCATTGAGATTGACTCTCTGTACGAAGGCATCGATTTCTACACCTCCATCACCAGGGCTCGCTTTGAGGAGATGAACTCGGACCTTTTCAGAGGGACACTGGAGCCAGTGGAGAAGGCGCTGAGGGACGCCAAGATGGACAAGGCTCAGATCCACGACATCGTACTGGTGGGAGGCTCCACTCGTATCCCCAAGATCCAGAAGCTGCTGCAGGACTTCTTCAACGGCAGGGAACTGAACAAGAGCATCAACCCTGATGAGGCCGTGGCCTACGGCGCGGCTGTCCAGGCGGCCATCCTCATGGGCGACACCTCTGAGAACGTGCAGGACTTGCTGCTGCTGGACGGGCCCACCATTGAGGAGGTGGATTAG
>TU36882
CGAAGGTGCCGCCACCGCAGGGGACACTCACCTGGGCGGGGAGGACTTTGACAACCGCATGGTCAACCACTTTGTGGAGGAGTTCAAGAGGAAATACAAGAAGGACATCAGTCAGAACAAGAGGGCGCTGCGGAGGCTGCGCACAGCGTGCGAGAGGGCCAAGAGGACCCTGTCCTCCAGCTCCCAGGCCAGCATTGAGATTGACTCTCTGTACGAAGGCATCGATTTCTACACCTCCATCACCAGGGCTCGCTTTGAGGAGATGAACTCGGACCTTTTCAGAGGGACACTGGAGCCAGTGGAGAAGGCGCTGAGGGACGCCAAGATGGACAAGGCTCAGATCCACGACATCGTACTGGTGGGAGGCTCCACTCGTATCCCCAAGATCCAGAAGCTGCTGCAGGACTTCTTCAACGGCAGGGAACTGAACAAGAGCATCAACCCTGATGAGGCCGTGGCCTACGGCGCGGCTGTCCAGGCGGCCATCCTCATGGGCGACACCTCTGAGAACGTGCAGGACTTGCTGCTGCTGGACGTGGCCCCACTGNN

Function

symbol description
hsp70l Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and misfolded protein binding activity. Acts upstream of or within several processes, including definitive hemopoiesis; response to cadmium ion; and response to heat. Predicted to be active in cytosol; nucleus; and plasma membrane. Is expressed in lens.
hsp70.3 Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and misfolded protein binding activity. Acts upstream of or within camera-type eye morphogenesis. Predicted to be active in cytosol; nucleus; and plasma membrane. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; autoimmune disease of musculoskeletal system (multiple); cystic fibrosis; schizophrenia (multiple); and toxic shock syndrome. Orthologous to several human genes including HSPA1B (heat shock protein family A (Hsp70) member 1B).

NR:

description
PREDICTED: heat shock 70 kDa protein-like

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0009408 response to heat biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0046686 response to cadmium ion biological_process
GO:0005524 ATP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008238 True 1218 mRNA 0.58 2 47714333 47716582
TU36882 False 549 TUCP 0.59 2 47664517 47715537

Neighbor

gene id symbol gene type direction distance location
AMCG00008226 NA coding upstream 1133759 46530450 ~ 46530758 (+)
AMCG00008221 LOC102785565 coding upstream 1533500 46124130 ~ 46131017 (+)
AMCG00008220 NA coding upstream 1573524 46077307 ~ 46090993 (+)
AMCG00008219 NA coding upstream 1595699 46039948 ~ 46068818 (+)
AMCG00008218 NA coding upstream 1752910 45867343 ~ 45911607 (+)
AMCG00008239 NA coding downstream 84516 47801098 ~ 47813090 (+)
AMCG00008243 slc35c2,LOC105890624 coding downstream 179336 47895918 ~ 47908312 (+)
AMCG00008248 NA coding downstream 238452 47955034 ~ 48001940 (+)
AMCG00008247 LOC107565828 coding downstream 298518 48015100 ~ 48030729 (+)
AMCG00008246 NA coding downstream 326164 48042746 ~ 48067543 (+)
G29431 NA non-coding upstream 48586 47613501 ~ 47615931 (+)
G29425 NA non-coding upstream 58092 47605140 ~ 47606425 (+)
G29424 NA non-coding upstream 61831 47602218 ~ 47602686 (+)
G29423 NA non-coding upstream 63416 47600820 ~ 47601101 (+)
G29422 NA non-coding upstream 65049 47599234 ~ 47599468 (+)
G29546 NA non-coding downstream 419887 48136469 ~ 48136724 (+)
G29612 NA non-coding downstream 698421 48415003 ~ 48419063 (+)
G29615 NA non-coding downstream 712393 48428975 ~ 48429218 (+)
G29661 NA non-coding downstream 957666 48674248 ~ 48676139 (+)
G29675 NA non-coding downstream 1045390 48761972 ~ 48762297 (+)
G29421 NA other upstream 68831 47595104 ~ 47595686 (+)
G29418 NA other upstream 78282 47580213 ~ 47586235 (+)
G29353 NA other upstream 1396190 46267891 ~ 46268327 (+)
G29183 NA other upstream 2223453 45440513 ~ 45441064 (+)
AMCG00008194 acot8,LOC107730625,LOC107670930,LOC107722006 other upstream 2320603 45340574 ~ 45343914 (+)
AMCG00008242 hsp70.2,LOC108441608,LOC105896344,LOC105896343 other downstream 146987 47863569 ~ 47892071 (+)
AMCG00008241 LOC106596195,LOC106601018,LOC105896344,LOC105896343 other downstream 197286 47913868 ~ 47918128 (+)
AMCG00008249 NA other downstream 213085 47929667 ~ 47941754 (+)
AMCG00008263 NA other downstream 1447234 49163816 ~ 49171017 (+)
AMCG00008270 ttpal other downstream 1571664 49288246 ~ 49295359 (+)

Expression


Co-expression Network