AMCG00008242 (hsp70.2,LOC108441608,LOC105896344,LOC105896343)


Basic Information

Item Value
gene id AMCG00008242
gene name hsp70.2,LOC108441608,LOC105896344,LOC105896343
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47863569 ~ 47892071 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008242
ATGTCTGCGCCCACGGGAGTTTCTATTGGGATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAACATGGCAAAGTGGAGATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTATGTGGCCTTCACGGACACAGAGAGGCTGATTGGAGATGCTGCCAAGAACCAGGTGGCCATGAACCCCAACAACACCATCTTTGATGCCAAGCGCCTGATTGGCAGAAAGTATGACGACTCAGTGGTGCAGGCTGATATGAAGCACTGGCCTTTCAAGGTGATCAGCGATGGAGGGAAGCCCAAGGTGGAGGTGGACTACAAAGGAGAGAATAAGACCTTCTACCCAGAGGAGATCTCCTCCATGGTGCTGATCAAAATGAAAGAGATTGCGGAGGCATACCTGGGCCAGAAAGTGTCCAACGCCGTCATCACTGTCCCTGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCCGGAGTGATCGCAGGCCTGAACGTGCTGAGAATCATCAACGAGCCCACAGCGGCCGCCATCGCCTACGGGCTGGACAAGGGCAAGAGAGGAGAGCGCAACGTCCTGATCTTTGACCTGGGTGGCGGCACCTTCGACGTGTCCATCCTGACCATCGATGATGGCATCTTTGAGGATGCTGACTGGTACAAAGCAGAGGATGATGCCCAGAGGGATAAGATAGCTGCCAAGAACTCCCTGGAGTCCTACGCCTTCAACATGAAGAGCAGCGTGGAGGACGAGAACCTGAAAGGCAAGATCAGCAAGGACGACAAGAAGAAGGTGATTGAGAAGTGCAACCAGGCCATCTCCTGGCTGGAGTCAAACCAGCTGGCAGAGAAGGAGGAGTATGAGCATCAGCTGAAAGAGCTGGAGAAAGTGTGTAACCCCATCATCACCAAGCTGTACCAGGGAGGGATGCCAGGAGGGATGCCAGCGGGAGGCTGTGGAGGCCAGGCACGGGCAGGCGCAGGGTCCGCCTCCCAGGGGCCCACCATTGAGGAGGTGGATTAG
>TU36904
CTCATGCTAACGGAAAGTCCGCAATATTGGCAGATTTAAAGCCTGTCAAAAGCCGCATCCAGTGTGAGAAGCAGTTTTTCTTCAGAGCAACCAGTATTCCtAAATAACCAGGATGTCTGCGCCCACGGGAGTTTCTATTGGGATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAACATGGCAAAGTGGAGATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTATGTGGCCTTCACGGACACAGAGAGGCTGATTGGAGATGCTGCCAAGAACCAGGTGGCCATGAACCCCAACAACACCATCTTTGATGCCAAGCGCCTGATTGGCAGAAAGTATGACGACTCAGTGGTGCAGGCTGATATGAAGCACTGGCCTTTCAAGGTGATCAGCGATGGAGGGAAGCCCAAGGTGGAGGTGGACTACAAAGGAGAGAATAAGACCTTCTACCCAGAGGAGATCTCCTCCATGGTGCTGATCAAAATGAAAGAGATTGCGGAGGCATACCTGGGCCAGAAAGTGTCCAACGCCGTCATCACTGTCCCTGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCCGGAGTGATCGCAGGCCTGAACGTGCTGAGAATCATCAACGAGCCCACAGCGGCCGCCATCGCCTACGGGCTGGACAAGGGCAAGAGAGGAGAGCGCAACGTCCTGATCTTTGACCTGGGTGGCGGCACCTTCGACGTGTCCATCCTGACCATCGATGATGGCATCTTTGAGGTGAAGGCCACCGCAGGGGACACTCACCTGGGCGGGGAGNNN
>TU36905
GATGACTTGATGGTGCAGGCTGATATGAAGCACTGGCCTTTCAAGGTGATCAGCGATGGAGGGAAGCCCAAGGTGGAGGTGGACTACAAAGGAGAGAATAAGACCTTCTACCCAGAGGAGATCTCCTCCATGGTGCTGATCAAAATGAAAGAGATTGCGGAGGCATACCTGGGCCAGAAAGTGTCCAACGCCGTCATCACTGTCCCTGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCCGGAGTGATCGCAGGCCTGAACGTGCTGAGAATCATCAACGAGCCCACAGCGGCCGCCATCGCCTACGGGCTGGACAAGGGCAAGAGAGGAGAGCGCAACGTCCTGATCTTTGACCTGGGTGGCGGCACCTTCGACGTGTCCATCCTGACCATCGATGATGGCATCTTTGAGGTGAAGGCCACCGCAGGGGACACTCACCTGGGCGGGGAGNNN

Function

symbol description
hsp70.2 Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and misfolded protein binding activity. Predicted to be involved in several processes, including cellular response to unfolded protein; chaperone cofactor-dependent protein refolding; and protein refolding. Predicted to be active in cytosol; nucleus; and plasma membrane. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; autoimmune disease of musculoskeletal system (multiple); cystic fibrosis; schizophrenia (multiple); and toxic shock syndrome. Orthologous to human HSPA1L (heat shock protein family A (Hsp70) member 1 like); HSPA1A (heat shock protein family A (Hsp70) member 1A); and HSPA1B (heat shock protein family A (Hsp70) member 1B).

NR:

description
Zgc:174006 protein

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0005524 ATP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008242 True 1038 mRNA 0.57 2 47889982 47892071
TU36904 False 814 TUCP 0.55 2 47889027 47890683
TU36905 False 462 TUCP 0.57 2 47863569 47890683

Neighbor

gene id symbol gene type direction distance location
AMCG00008239 NA coding upstream 50479 47801098 ~ 47813090 (+)
AMCG00008226 NA coding upstream 1332811 46530450 ~ 46530758 (+)
AMCG00008221 LOC102785565 coding upstream 1732552 46124130 ~ 46131017 (+)
AMCG00008220 NA coding upstream 1772576 46077307 ~ 46090993 (+)
AMCG00008219 NA coding upstream 1794751 46039948 ~ 46068818 (+)
AMCG00008243 slc35c2,LOC105890624 coding downstream 3847 47895918 ~ 47908312 (+)
AMCG00008248 NA coding downstream 62963 47955034 ~ 48001940 (+)
AMCG00008247 LOC107565828 coding downstream 123029 48015100 ~ 48030729 (+)
AMCG00008246 NA coding downstream 150675 48042746 ~ 48067543 (+)
AMCG00008251 arfgef2,LOC106532188 coding downstream 343616 48235687 ~ 48275348 (+)
G29431 NA non-coding upstream 247638 47613501 ~ 47615931 (+)
G29425 NA non-coding upstream 257144 47605140 ~ 47606425 (+)
G29424 NA non-coding upstream 260883 47602218 ~ 47602686 (+)
G29423 NA non-coding upstream 262468 47600820 ~ 47601101 (+)
G29422 NA non-coding upstream 264101 47599234 ~ 47599468 (+)
G29546 NA non-coding downstream 244398 48136469 ~ 48136724 (+)
G29612 NA non-coding downstream 522932 48415003 ~ 48419063 (+)
G29615 NA non-coding downstream 536904 48428975 ~ 48429218 (+)
G29661 NA non-coding downstream 782177 48674248 ~ 48676139 (+)
G29675 NA non-coding downstream 869901 48761972 ~ 48762297 (+)
AMCG00008238 hsp70l,hsp70.3,LOC105896343,LOC105896344 other upstream 146987 47664517 ~ 47716582 (+)
AMCG00008232 ddx27 other upstream 192148 47622952 ~ 47671421 (+)
G29421 NA other upstream 267883 47595104 ~ 47595686 (+)
G29418 NA other upstream 277334 47580213 ~ 47586235 (+)
G29353 NA other upstream 1595242 46267891 ~ 46268327 (+)
AMCG00008241 LOC106596195,LOC106601018,LOC105896344,LOC105896343 other downstream 21797 47913868 ~ 47918128 (+)
AMCG00008249 NA other downstream 37596 47929667 ~ 47941754 (+)
AMCG00008263 NA other downstream 1271745 49163816 ~ 49171017 (+)
AMCG00008270 ttpal other downstream 1396175 49288246 ~ 49295359 (+)
AMCG00008271 NA other downstream 1512785 49404856 ~ 49418746 (+)

Expression


Co-expression Network