Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00008243 |
| gene name | slc35c2,LOC105890624 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030123.1 |
| NCBI id | CM030123.1 |
| chromosome length | 53548854 |
| location | 47895918 ~ 47908312 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| slc35c2 | Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be part of collagen trimer. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in neuromast. Orthologous to human SLC35C2 (solute carrier family 35 member C2). |
| description |
|---|
| PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XX) chain-like |
| id | name | namespace |
|---|---|---|
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| K15280 | SLC35C2; solute carrier family 35, member C2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00008243 | True | 1011 | mRNA | 0.54 | 9 | 47895918 | 47908312 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00008239 | NA | coding | upstream | 82828 | 47801098 ~ 47813090 (+) |
| AMCG00008226 | NA | coding | upstream | 1365160 | 46530450 ~ 46530758 (+) |
| AMCG00008221 | LOC102785565 | coding | upstream | 1764901 | 46124130 ~ 46131017 (+) |
| AMCG00008220 | NA | coding | upstream | 1804925 | 46077307 ~ 46090993 (+) |
| AMCG00008219 | NA | coding | upstream | 1827100 | 46039948 ~ 46068818 (+) |
| AMCG00008248 | NA | coding | downstream | 46722 | 47955034 ~ 48001940 (+) |
| AMCG00008247 | LOC107565828 | coding | downstream | 106788 | 48015100 ~ 48030729 (+) |
| AMCG00008246 | NA | coding | downstream | 134434 | 48042746 ~ 48067543 (+) |
| AMCG00008251 | arfgef2,LOC106532188 | coding | downstream | 327375 | 48235687 ~ 48275348 (+) |
| AMCG00008252 | cse1l | coding | downstream | 384327 | 48292639 ~ 48326138 (+) |
| G29431 | NA | non-coding | upstream | 279987 | 47613501 ~ 47615931 (+) |
| G29425 | NA | non-coding | upstream | 289493 | 47605140 ~ 47606425 (+) |
| G29424 | NA | non-coding | upstream | 293232 | 47602218 ~ 47602686 (+) |
| G29423 | NA | non-coding | upstream | 294817 | 47600820 ~ 47601101 (+) |
| G29422 | NA | non-coding | upstream | 296450 | 47599234 ~ 47599468 (+) |
| G29546 | NA | non-coding | downstream | 228157 | 48136469 ~ 48136724 (+) |
| G29612 | NA | non-coding | downstream | 506691 | 48415003 ~ 48419063 (+) |
| G29615 | NA | non-coding | downstream | 520663 | 48428975 ~ 48429218 (+) |
| G29661 | NA | non-coding | downstream | 765936 | 48674248 ~ 48676139 (+) |
| G29675 | NA | non-coding | downstream | 853660 | 48761972 ~ 48762297 (+) |
| AMCG00008242 | hsp70.2,LOC108441608,LOC105896344,LOC105896343 | other | upstream | 3847 | 47863569 ~ 47892071 (+) |
| AMCG00008238 | hsp70l,hsp70.3,LOC105896343,LOC105896344 | other | upstream | 179336 | 47664517 ~ 47716582 (+) |
| AMCG00008232 | ddx27 | other | upstream | 224497 | 47622952 ~ 47671421 (+) |
| G29421 | NA | other | upstream | 300232 | 47595104 ~ 47595686 (+) |
| G29418 | NA | other | upstream | 309683 | 47580213 ~ 47586235 (+) |
| AMCG00008241 | LOC106596195,LOC106601018,LOC105896344,LOC105896343 | other | downstream | 5556 | 47913868 ~ 47918128 (+) |
| AMCG00008249 | NA | other | downstream | 21355 | 47929667 ~ 47941754 (+) |
| AMCG00008263 | NA | other | downstream | 1255504 | 49163816 ~ 49171017 (+) |
| AMCG00008270 | ttpal | other | downstream | 1379934 | 49288246 ~ 49295359 (+) |
| AMCG00008271 | NA | other | downstream | 1496544 | 49404856 ~ 49418746 (+) |
