Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00008247 |
| gene name | LOC107565828 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030123.1 |
| NCBI id | CM030123.1 |
| chromosome length | 53548854 |
| location | 48015100 ~ 48030729 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| description |
|---|
| PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 |
| id | name | namespace |
|---|---|---|
| GO:0035269 | protein O-linked mannosylation | biological_process |
| GO:0006506 | GPI anchor biosynthetic process | biological_process |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0004169 | dolichyl-phosphate-mannose-protein mannosyltransferase activity | molecular_function |
| GO:0004582 | dolichyl-phosphate beta-D-mannosyltransferase activity | molecular_function |
| id | description |
|---|---|
| K00721 | DPM1; dolichol-phosphate mannosyltransferase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00008247 | True | 1165 | mRNA | 0.40 | 7 | 48015100 | 48030729 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00008248 | NA | coding | upstream | 13160 | 47955034 ~ 48001940 (+) |
| AMCG00008243 | slc35c2,LOC105890624 | coding | upstream | 106788 | 47895918 ~ 47908312 (+) |
| AMCG00008239 | NA | coding | upstream | 202010 | 47801098 ~ 47813090 (+) |
| AMCG00008226 | NA | coding | upstream | 1484342 | 46530450 ~ 46530758 (+) |
| AMCG00008221 | LOC102785565 | coding | upstream | 1884083 | 46124130 ~ 46131017 (+) |
| AMCG00008246 | NA | coding | downstream | 12017 | 48042746 ~ 48067543 (+) |
| AMCG00008251 | arfgef2,LOC106532188 | coding | downstream | 204958 | 48235687 ~ 48275348 (+) |
| AMCG00008252 | cse1l | coding | downstream | 261910 | 48292639 ~ 48326138 (+) |
| AMCG00008253 | stau1 | coding | downstream | 317018 | 48347747 ~ 48376071 (+) |
| AMCG00008250 | NA | coding | downstream | 431564 | 48462293 ~ 48474532 (+) |
| G29431 | NA | non-coding | upstream | 399169 | 47613501 ~ 47615931 (+) |
| G29425 | NA | non-coding | upstream | 408675 | 47605140 ~ 47606425 (+) |
| G29424 | NA | non-coding | upstream | 412414 | 47602218 ~ 47602686 (+) |
| G29423 | NA | non-coding | upstream | 413999 | 47600820 ~ 47601101 (+) |
| G29422 | NA | non-coding | upstream | 415632 | 47599234 ~ 47599468 (+) |
| G29546 | NA | non-coding | downstream | 105740 | 48136469 ~ 48136724 (+) |
| G29612 | NA | non-coding | downstream | 384274 | 48415003 ~ 48419063 (+) |
| G29615 | NA | non-coding | downstream | 398246 | 48428975 ~ 48429218 (+) |
| G29661 | NA | non-coding | downstream | 643519 | 48674248 ~ 48676139 (+) |
| G29675 | NA | non-coding | downstream | 731243 | 48761972 ~ 48762297 (+) |
| AMCG00008249 | NA | other | upstream | 73346 | 47929667 ~ 47941754 (+) |
| AMCG00008241 | LOC106596195,LOC106601018,LOC105896344,LOC105896343 | other | upstream | 96972 | 47913868 ~ 47918128 (+) |
| AMCG00008242 | hsp70.2,LOC108441608,LOC105896344,LOC105896343 | other | upstream | 123029 | 47863569 ~ 47892071 (+) |
| AMCG00008238 | hsp70l,hsp70.3,LOC105896343,LOC105896344 | other | upstream | 298518 | 47664517 ~ 47716582 (+) |
| AMCG00008232 | ddx27 | other | upstream | 343679 | 47622952 ~ 47671421 (+) |
| AMCG00008263 | NA | other | downstream | 1133087 | 49163816 ~ 49171017 (+) |
| AMCG00008270 | ttpal | other | downstream | 1257517 | 49288246 ~ 49295359 (+) |
| AMCG00008271 | NA | other | downstream | 1374127 | 49404856 ~ 49418746 (+) |
| AMCG00008279 | NA | other | downstream | 1808783 | 49839512 ~ 49858576 (+) |
| AMCG00008288 | ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 | other | downstream | 2291984 | 50322713 ~ 50356404 (+) |
