AMCG00008248


Basic Information

Item Value
gene id AMCG00008248
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47955034 ~ 48001940 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008248
GAAAGCTCAAACTGACGGTGCTGTCTGAAGACCGGCTACAGATGAAATGGAAGGAGGCCGAGGGGCCCGTTCAAGGGTATAAGGTCCGAGTCAAGCCTATATCAGTTGACAGTCTGAGGGAGGAGTCTAAAAACCGTAGTGGAAGCAGAGAACAAAAGAAGAAGGCCCTGGATGACTCTGAAGAAATTGCTGCAGACAACTCCACCCAGGCGCCCCAGTCTGCCAACACTGTCGAGGAGGAATCTGCACAGATGGACATAGTCCCTAGAAACAAGACTTCGGGAGAGAACAGTTCCAAAGGCAGGAAGAAGGGACGCTCCAAAACTCCCAGCACAAATGAGAAGCAGACCcgcaaaaaaactgaaaaagaaaactccagcaaagaaaaaccaacaaagacagtctccacacaggcagagacaGCGAGGAGAATGTTTGCATGCGAGACCGCAGCCCCGGCGGACATTGTGTTCCTGGTCGATGGGTCCTGGAGTATTGGAAGGAGCAACTTCAAACGTGTGCGTGACTTCCTGGAGAACGTCATGATTCCCTTCAACATCGCAAGTGACAGCATAAGGATTGCGTTGTCGCAGTACAGTGGAGATCCACGCACAGAGTGGAACCTGAATAATTTCACCACCAAAGAGCAGCTCGTAGAAGCTGTGAGGAACTTTCGATACAAGGGAGGCAACACGTTCACAGGCCAGGCTTTGATGCATGTCTTGGAGGAGAATCTGAAAGAGGAGTCAGGAGCCCGGCTGGACTCACCCCAGTTTGTTGTACTTCTTACTGACGGCAAGTCCCAAGATGACGCCATCATCTCAGCACAGAAACTGAAGGATGCTGGTGTTGAGATCATCGCTGTGGGGGTGAAGAATGCAGATGAGGCAGAGCTGAAGCAGATCGCCTCGAAGCCCATTGAGCTCAGCGTCTTCAATGTCAACGACTTCCCTCTGCTCAGCAGGCTGGTGGACAGACTGAGCCGCATTTTGTGTGGGAAGATTGAAGACAAGAGCAAAGCTAAGAGACTGGAGAAGCCTACCCAGCCTGCGGTGGAGACAGACACTGGGCCCACAAACCTGGCCTTCTTTGAGGTGAATTCCAGGGACTTCAAAGTGAGCTGGAGTCCGCCCCCCCAGCCCGTGCACAGATATAGGGTTGTCTATCACAGTGCAGAGGGAGGGAGCCCCCAGGAGACTGAGTACCATGTCTCGATCTTCCCTGTTTACGAGAGAAATGTTGGCACTGGCCTGCGGGGGACTGTGACCACATTGCCGCTGGCGCCGCCCCAGTACCTCCAGATCTACTCCACCACGCACAACAGCCTGCGGGTGAAGTTTGGTCCAGAAAAGACAGACGTTGAGCTTGCTGGTTTGCTGCCCTCGACGGACTACTCTGTCACAGTGTATGCTCTCTATGATGAAGACCCCAGCGACCCCATCACCGCCATGGCGAGAACAAAGCCCCTCAGCCCTCCTCTCAGCCTACAGTTTCCCCAGATCAGCCACAGCACTGTGAGAGTGAGCTGGATTCCTGCCTCAGACAGAGTCCCCAGGCACCGACTCACCTACAGTACAAACCACGGCAGTGATGTCAAGCATGTAGAGGTTGAGGAAACAACATCCTTCCTGCTTCGGAATCTCTCCTCCTTATCAAACTATATTGTGGCCATCTGCTCTGTCTACGATGAGGGACTTTCTACTCTGATAACTGGCAATGTCACAACTTTGAAGGTGCCCTCCCCTTCCGAGCTGAGAGTTGCTAATTTCTCTGGGAGAGACATCATGGTGGAGTGGAAGTCTGCGGCCGATGATGTTGTCTCTTACCTCATCAAATGGATTTCACTCAGCGGTGGAAAGCTGAACCAGCTCACAGTCAGTGGAGTCAGTGAGTCTGCCGTGCTGGAGAGAGTGGAGAATAATGATGAATaccagatctctctctctgcactgtaCGCCGACGGGGCGCAGAGCGAGGCAGTGGCCATTCGCTACAGCACCTTTTCTGGAGGTGGCCCTTCCAACTTAGTGATAGATGAGGAGGCAGTGAACAGCCTGCTGGTGAGATGGGATCACCCTAACGCCCATGTTTCCCAGTACCGTGTACACTACACTGCGATGAGAGGTGAACCTGATGAGCAGACTGTATCTGTCCCTGGGAGAGAGAACAGCGTCCGACTGAAATCTCTGCTCCCAGACACCAAGTACAGTGTAGTGGTCACTGCAGTGTACAGAAACAGAGAAGGGGGCAGTGCATCTGCCCAGGGAAAGACATCTACCCTGAGAGTTAGCAGTTTGAATGTGTACAAGTCTGACCACTCCAGCCTGTGTGTCTCGTGGAAGCCTGTTACTCCAGCGACTGGTTATAGAGTAGTTATCCAATCTCTGAAAGacaagaaaacagaagacaggAATCTGGACAGTCTTACCAGTAGTCACTGCTTCACTGATCTACAGCCTGAGGTGGTGTATCGCATCAGCATGTACTCCCTGCTCCAAACAGCAGAGGGCACCCCAGTCACTGTCCTGCATTCTACAGCCGCTGGGCCTGCAAAACTTTCCCCTCCGTCCAGGTACATCCCTCACAACAATGAAGACCTGTTTCCATTAATATACAGCTcatatttgtctgtgttttgtgcagTGTGTCCCGAGGTGACCATCAGAAACACATTAGTCAAAGGCTTCGACATGATGGAGGCATTTGGACTAACCAGAAGTCAGTTTGCCTCAGTGGAGGGGGTGTCTGCAGAGCCCTTTGTGTTCAACACTATTCCCTCTTACACCATTTACCAAGACATCCAGCTGACACAGAGCACCAGttTCATCCATCCTGCAGGTATTCCTACTGAACATACCATCAGCTTCCTGTTCAGGGTCCTTCAGGACACCCCGAAGGATGCCTTTGCCCTCTGGCAGCTGACTGATGAAGACTTCCAGCCAAAGATTGGGGTCATCCTGGACCCTGTGAGAAAACATATAAAGTATTTTAGCCAGGATTTCAGTGAAGTGGTTCAGGAAGTCAACTTTGACCAACCCCACGTGAAAAAGTTGTTTCATGGCAGCTATCACAAGGTCCACTTGGCTGTAAGTGAAATCCATGTCAGTCTGTATATAGACTGTCAGCTTGTGGCTGAGAGCCCAGCCAACTCTCTGGGCACCATTCCCACCAATGGCTTTGAAATGCTGGGCAAGCTGGTGAAGACTAGAGGGCCGAACAGTGGATCTGTGTCATTTCAGATGCAGTCCTTTGAGATTGTCTGTAATGCTTCCTGGCCTTTGGAAGACACCTGTTGTGATATTCCAGCCAAGAGAGATGAGGAGAGCTGCCCAGCGCCTGCCTATGCCTGTACCTGCACCTCCAATATCCCAGGGGCTGCTGGGCCGCCTGGTCCCCCGGGTAAGCCAGGACCTAggggtgagagaggagagaaaggggagcCAGGGCCACAGGGGGAGGCCGGCCCTCCAGGGGAGATGGGCTCAGGGGGGCCAGCTGGTTCCCTGGGGTCCCATGGCCCTCAAGGAATGACAGTTCGAGGTCGAGTGGGTCCTCCTGGTGAACGTGGGGAAAAGGGAGACATTGGAAAGCCTGGACTTCAGGGAGCCCCAGGGCCACCAGGTCCTTTAGGAAAGGAAGGGGTGCCAGGCCCCAAGGGAACCAGAGGAGTGGAAGGAAATCAGGGCCCCCCTGGCCCCTCAGGTCCACGAGGTATGCCTGGGGTCCCAGGTGCAGAAGGGGAGAGGGGCCACCCAGGGTTGGTGGGGCCAACGGGGGAGCCTCAGTCCTTAGCTATCATTTATCAGCTTGTGACACAGGCCTGTGAACAGCTTGTCCATAATGAAGTACTGAAGCTGGACTCCTTCCTCAATGAGGTGAGCAGGAAGCCTGTCCCACTGGAAGAGCCAGTGGGGCCGCCAGGAGAACCAGGGACTCCAGGAACCACAGGGTCCCCAGGACCAAGGGGGGCACCT

Function

GO: NA

KEGG:

id description
K24357 COL20A; collagen type XX alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008248 True 3974 mRNA 0.53 35 47955034 48001940

Neighbor

gene id symbol gene type direction distance location
AMCG00008243 slc35c2,LOC105890624 coding upstream 46722 47895918 ~ 47908312 (+)
AMCG00008239 NA coding upstream 141944 47801098 ~ 47813090 (+)
AMCG00008226 NA coding upstream 1424276 46530450 ~ 46530758 (+)
AMCG00008221 LOC102785565 coding upstream 1824017 46124130 ~ 46131017 (+)
AMCG00008220 NA coding upstream 1864041 46077307 ~ 46090993 (+)
AMCG00008247 LOC107565828 coding downstream 13160 48015100 ~ 48030729 (+)
AMCG00008246 NA coding downstream 40806 48042746 ~ 48067543 (+)
AMCG00008251 arfgef2,LOC106532188 coding downstream 233747 48235687 ~ 48275348 (+)
AMCG00008252 cse1l coding downstream 290699 48292639 ~ 48326138 (+)
AMCG00008253 stau1 coding downstream 345807 48347747 ~ 48376071 (+)
G29431 NA non-coding upstream 339103 47613501 ~ 47615931 (+)
G29425 NA non-coding upstream 348609 47605140 ~ 47606425 (+)
G29424 NA non-coding upstream 352348 47602218 ~ 47602686 (+)
G29423 NA non-coding upstream 353933 47600820 ~ 47601101 (+)
G29422 NA non-coding upstream 355566 47599234 ~ 47599468 (+)
G29546 NA non-coding downstream 134529 48136469 ~ 48136724 (+)
G29612 NA non-coding downstream 413063 48415003 ~ 48419063 (+)
G29615 NA non-coding downstream 427035 48428975 ~ 48429218 (+)
G29661 NA non-coding downstream 672308 48674248 ~ 48676139 (+)
G29675 NA non-coding downstream 760032 48761972 ~ 48762297 (+)
AMCG00008249 NA other upstream 13280 47929667 ~ 47941754 (+)
AMCG00008241 LOC106596195,LOC106601018,LOC105896344,LOC105896343 other upstream 36906 47913868 ~ 47918128 (+)
AMCG00008242 hsp70.2,LOC108441608,LOC105896344,LOC105896343 other upstream 62963 47863569 ~ 47892071 (+)
AMCG00008238 hsp70l,hsp70.3,LOC105896343,LOC105896344 other upstream 238452 47664517 ~ 47716582 (+)
AMCG00008232 ddx27 other upstream 283613 47622952 ~ 47671421 (+)
AMCG00008263 NA other downstream 1161876 49163816 ~ 49171017 (+)
AMCG00008270 ttpal other downstream 1286306 49288246 ~ 49295359 (+)
AMCG00008271 NA other downstream 1402916 49404856 ~ 49418746 (+)
AMCG00008279 NA other downstream 1837572 49839512 ~ 49858576 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other downstream 2320773 50322713 ~ 50356404 (+)

Expression


Co-expression Network