AMCG00008250


Basic Information

Item Value
gene id AMCG00008250
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48462293 ~ 48474532 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008250
GAAAGGTTAATATGGAATATTCTACTGGCGCTTTGTTTTCCTCAGCGGTACTTGGGGAAAGTAAATCTGTTgctgatatatttaaattggcaaattgtgatgattattaattaaatcgGAATTCAGTTACTTAGTAAAAACGACGTAAGACCTTTTGCTAATagcaaataataacaaatacattaatatatttgaaagaagATTGAATGAGAATACACACGCCTGCTTATTGTCTCATTTCTTGAACATTTGTGAATGCACTTCACTGGGAGTCCGTAAACTTTGtttcagccttttttttttgtattattttattcgaTGCATAGTGATGCATTTCtcgatttgttttttcattttttttgtggggCAGTCCACGTTTTGGGCACCCGTCTGTAATGCAGGGTGTATGCACTCGGGCTTGTGCTGCAGCGGCCGGGACGCGCTGTGCGTCAGCCAGGGATGGAGACCCGACCGGTCCCATGGGACTTGCTACTGCGACCAGGCGTGCACTGCCACCCTGGACTGCTGCCACGATTACCAACAAGCATGCCCAGCGGTTTCCTGTGAGGTGAGTCAGTGGAATGCATGGTCTGACTGTGCGGAGCCTTGCACAACCACATACCGAGTTCGTAGGAGACATGTGGTTCAAGAGCCGCAGAATGGGGGCGGTCCCTGTCCTCATGTCCAGGAGTATGCTGGCTGTGTGGAATATTGGAGTCAACACAAGGAGTGTCGAAAGTCTTTAGTTCCTGCACTTATCACTACAGGGGGTTATGGCACAGCTAGGAGGAAAAGAGACCTCTCCAGCACCAGGGATATGAGAGGGTACTGTGTGCAGTTCCTAGTGAAGTCGCTTTCTTCTGGGTGTCAGCACACCAGGGGGCCCCACATGCACTGGATGCGGTACCTGCGCGAGGGCCACACCGTGTGTGTGGAGTGCCAGCCCCCCGCTCTCAGCACTGATCAGCAGTGCAATGGTGATGGAGAAGAAGCTGAAAAGAACCAGATTCTTCAATGGCAGGCCGTGGGGAACACACACTGTTGGGGAATGTGGAAACGCATGCGTCGCCTGGATTTCTGTTCCTGCCCCATTGTGCACAGCTTTCTATTTATCTGAGGTTTATTTGTCAAGTCTTACAAAGGCATGATCTATGCATGCTGCTGGACCcaagttatttaaacaaattaacaaaaataaaatctttaaaagattATAACATTTTTTAGCAGGGTTGTTTGGGCTGAGTCACATGGGAATCTGTGTGCATACTTATTTTGTGGTATAATGAGAGAGAACTTCATATCATAGTTGGGTGGAAATGCATCCTAGTTGGTGAGTTCTTATGaataattgcttttattgtCTGCATTGTACAATCcaaacatttttgctttgtgataTTGCAATAGAAAATGTCTTaatatttattagtattagcataaagtattattttgcaatgtatAGTACAGAATGatgaaatacaaaagtgcaaaattttgtattcaaatataaaacattacattgtttacatttgtcattcatgatttgccttttatatttacttgattaaaatataattacatacaatTCGTCTATGATGTGTAATGAAAGTAAAACACTTAAATCACTTAAGTTAAAATACCTCTGCTTAAACGGTCTACTGGAAACAACAttattgctttgaaatgctcaCTTAATAAAGTTTTCTTGAAAAAAGTTTGTCATACAAGTGAGATGTAGTATGATAGGGAATGCAACAGACACCACTTCACACAACTCACATCCAGGTGAGCTTTCTGGTTGATGAGTCCAAACTGGACCAACATTTGAGCAGACATAAAATTGATTTTGAGTGCACAAAAATGGGTAATATGACTAGTGGTATGCAAGATTAATCATTCAAATGCATAATGAAGCAGaagaaactaaatacaaaaatgagtttgtaattgaatttctgtatttgtaCTGGGAATAAATGTAGTTGTCAGCAAGTTACAATCCAGAGTTTTCAGTATTAGTCTAAGGAAGTACAATATCATTGTGTGTGAATGTTGAAAGATCAAATAAAGGGCTAGAGTTTGCATGCATGAACTACAGCATCAAAAATGAATACACTGACAAAATGAGTAATGGAGTAAAGGAGAAATAATGCTAGTATTGAG

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008250 True 2166 mRNA 0.40 5 48462293 48474532

Neighbor

gene id symbol gene type direction distance location
AMCG00008253 stau1 coding upstream 86222 48347747 ~ 48376071 (+)
AMCG00008252 cse1l coding upstream 136155 48292639 ~ 48326138 (+)
AMCG00008251 arfgef2,LOC106532188 coding upstream 186945 48235687 ~ 48275348 (+)
AMCG00008246 NA coding upstream 394750 48042746 ~ 48067543 (+)
AMCG00008247 LOC107565828 coding upstream 431564 48015100 ~ 48030729 (+)
AMCG00008262 stk35,LOC105016730,LOC106583621,LOC103372836,LOC104935842 coding downstream 449332 48923864 ~ 48940095 (+)
AMCG00008272 NA coding downstream 994757 49469289 ~ 49471615 (+)
AMCG00008280 jph2,LOC107707015,LOC108275945 coding downstream 1075374 49549906 ~ 49560080 (+)
AMCG00008281 NA coding downstream 1112535 49587067 ~ 49596793 (+)
AMCG00008283 NA coding downstream 1405447 49879979 ~ 49881352 (+)
G29615 NA non-coding upstream 33075 48428975 ~ 48429218 (+)
G29612 NA non-coding upstream 43230 48415003 ~ 48419063 (+)
G29546 NA non-coding upstream 325569 48136469 ~ 48136724 (+)
G29431 NA non-coding upstream 846362 47613501 ~ 47615931 (+)
G29425 NA non-coding upstream 855868 47605140 ~ 47606425 (+)
G29661 NA non-coding downstream 199716 48674248 ~ 48676139 (+)
G29675 NA non-coding downstream 287440 48761972 ~ 48762297 (+)
G29677 NA non-coding downstream 288153 48762685 ~ 48803905 (+)
G29692 NA non-coding downstream 345943 48820475 ~ 48820694 (+)
G29722 NA non-coding downstream 492424 48966956 ~ 48967220 (+)
AMCG00008249 NA other upstream 520539 47929667 ~ 47941754 (+)
AMCG00008241 LOC106596195,LOC106601018,LOC105896344,LOC105896343 other upstream 544165 47913868 ~ 47918128 (+)
AMCG00008242 hsp70.2,LOC108441608,LOC105896344,LOC105896343 other upstream 570222 47863569 ~ 47892071 (+)
AMCG00008238 hsp70l,hsp70.3,LOC105896343,LOC105896344 other upstream 745711 47664517 ~ 47716582 (+)
AMCG00008232 ddx27 other upstream 790872 47622952 ~ 47671421 (+)
AMCG00008263 NA other downstream 689284 49163816 ~ 49171017 (+)
AMCG00008270 ttpal other downstream 813714 49288246 ~ 49295359 (+)
AMCG00008271 NA other downstream 930324 49404856 ~ 49418746 (+)
AMCG00008279 NA other downstream 1364980 49839512 ~ 49858576 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other downstream 1848181 50322713 ~ 50356404 (+)

Expression


Co-expression Network