AMCG00008253 (stau1)


Basic Information

Item Value
gene id AMCG00008253
gene name stau1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48347747 ~ 48376071 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008253
ATGTGTCTGGTGAATGAGTTAGCCCGTTTCAACAAGATACAGCCAGAGTACAAACTTCTGAGTGAACAAGGACCAGCTCACTCTAAGatATTTTCAGTGCGACTGACTCTGGGGGAGCAGCACTGGGAAGCTGAGGGAACCAGCATCAAGAAAGCTCAACATGCAGCTGCTGCCAGTGCCCTCTCCCAAACCACACTGCCCAAGCCCAGTCTACGGCCCCCTCGCAACACAGGCAAGAACCCAGacagTATAACCCATACTGTGGAGCTAAATGCACTTTGTATGAAACTTGGAAAAAAACCAATCTACAAACCCATTGATCCTTATCCTGGAATGAGACCCAACTTCAATTACAATGTCCGAGCTCCTGGCCCCTATCCAAGGTACTATTACCCGTTCCCCCCAGTGGGGCCAGTGCTGTATCATATGGAACTGTCTATCGGGGGCCAGCAGTTCCATGGCAAAGGTAGGACCAGGCAAGCTGCAAAGCACGATGCCGCTGCCAAAGCACTGAAGGTCCTACAGAAAGAGCCCCTTTTGGAGAAGAAGCTGGAGGTAAATGGAGAACAATCAGAAGAGAACctaaacaaatctgaaatcaGCCAAGTATTAAAAGAAACTGGGCCCCCACACATGAAGAGCTTCATCATTAAAGTGTCTGTAGGTGAATTTTCAGGGGAGGGAGATGGAAAGAGCAAAAAGATTGCAAAGAAGAACGCAGCCACGGCTGTGCTTGATGAGCTGAAGAAACTGCCACCACTTCCCAGTGTGGAGAAGGTGCAGCCACGcatcaaaaagaaaaccaagtCAATAGTTAAACTACAGACGAGCCCGGAGTACGGCCAGGGCATGAACCCTATCAGCCGGCTTGCTCAGATCCAGCAGGCGAAGAAAGAGAAGGAGCCGGAGTACAGCTTGGTTACAGAGAGGGGGCTTCCCCGTCGCAGAGAGTTCATCATGCAGGTCAAAATTGGCAACCAGTCTGCAGAAGGCATGGGTCCCAGTAAGAAGGTAGCTAAACGTAATGCAGCTGAGAAGATGTTGGAGCTAATGGGATTTAAAGTGCCTCAGCCACAGCCCCCCAAACCTGCTTTAAAAACTGACGAAAAGgtacCATTGAAGAAACCTGGAGACGGAAGGAAAGTGACCTTCTTTGAGCCAGGATCCGTAGAGGATAGCGGAATAAGTAACAAGGAAGATGATTTCCGGATGCCCTTCATGAGTCATCAACAATTGCCAGCAGGGATCTTGCCAATGGTACCAGAGGTGGCTCAGGCTGTGGGTGCCAGTCAAGGACATCATATAAAAGACTACAACCGCTCCCCCATTAATCCTGCTAAGGCCACTGTCACAGCAATGATTGCCAGGGAGCTGCTGTATGGTGGCACGTCTCCAACAGCCGAGACCATCCTAAAAGGCAGCAACAGCCTCGGACACCTCCCGCACGGACCCCTCACCCGACCCTCTGAGCAACTCGACTACCTGTCCGCTGTACAAGGACTCCAGGTGGAGTATAAAGACTTTcccaaaaacaacaagaacgAGTTTGTGTCTCTGATAAACTGCTCATCCCAGCCCCCTCTTATCAGCCATGGAATAGGCAAGGATGTGGAATCTTGTCACGATATGgCTGCCTTGAATATACTGAAATTACTCTCAGAGCTGGACCAACAGTCTAACGACAGAACTGGAAACGGACCAATTTCT

Function

symbol description
stau1 Enables RNA binding activity. Acts upstream of or within germ cell development. Is expressed in brain; gonad; musculature system; and neural tube. Orthologous to human STAU1 (staufen double-stranded RNA binding protein 1).

NR:

description
PREDICTED: double-stranded RNA-binding protein Staufen homolog 1 isoform X2

GO: NA

KEGG:

id description
K17597 STAU; double-stranded RNA-binding protein Staufen

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008253 True 1707 mRNA 0.50 12 48347747 48376071

Neighbor

gene id symbol gene type direction distance location
AMCG00008252 cse1l coding upstream 21609 48292639 ~ 48326138 (+)
AMCG00008251 arfgef2,LOC106532188 coding upstream 72399 48235687 ~ 48275348 (+)
AMCG00008246 NA coding upstream 280204 48042746 ~ 48067543 (+)
AMCG00008247 LOC107565828 coding upstream 317018 48015100 ~ 48030729 (+)
AMCG00008248 NA coding upstream 345807 47955034 ~ 48001940 (+)
AMCG00008250 NA coding downstream 86222 48462293 ~ 48474532 (+)
AMCG00008262 stk35,LOC105016730,LOC106583621,LOC103372836,LOC104935842 coding downstream 547793 48923864 ~ 48940095 (+)
AMCG00008272 NA coding downstream 1093218 49469289 ~ 49471615 (+)
AMCG00008280 jph2,LOC107707015,LOC108275945 coding downstream 1173835 49549906 ~ 49560080 (+)
AMCG00008281 NA coding downstream 1210996 49587067 ~ 49596793 (+)
G29546 NA non-coding upstream 211023 48136469 ~ 48136724 (+)
G29431 NA non-coding upstream 731816 47613501 ~ 47615931 (+)
G29425 NA non-coding upstream 741322 47605140 ~ 47606425 (+)
G29424 NA non-coding upstream 745061 47602218 ~ 47602686 (+)
G29423 NA non-coding upstream 746646 47600820 ~ 47601101 (+)
G29612 NA non-coding downstream 38932 48415003 ~ 48419063 (+)
G29615 NA non-coding downstream 52904 48428975 ~ 48429218 (+)
G29661 NA non-coding downstream 298177 48674248 ~ 48676139 (+)
G29675 NA non-coding downstream 385901 48761972 ~ 48762297 (+)
G29677 NA non-coding downstream 386614 48762685 ~ 48803905 (+)
AMCG00008249 NA other upstream 405993 47929667 ~ 47941754 (+)
AMCG00008241 LOC106596195,LOC106601018,LOC105896344,LOC105896343 other upstream 429619 47913868 ~ 47918128 (+)
AMCG00008242 hsp70.2,LOC108441608,LOC105896344,LOC105896343 other upstream 455676 47863569 ~ 47892071 (+)
AMCG00008238 hsp70l,hsp70.3,LOC105896343,LOC105896344 other upstream 631165 47664517 ~ 47716582 (+)
AMCG00008232 ddx27 other upstream 676326 47622952 ~ 47671421 (+)
AMCG00008263 NA other downstream 787745 49163816 ~ 49171017 (+)
AMCG00008270 ttpal other downstream 912175 49288246 ~ 49295359 (+)
AMCG00008271 NA other downstream 1028785 49404856 ~ 49418746 (+)
AMCG00008279 NA other downstream 1463441 49839512 ~ 49858576 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other downstream 1946642 50322713 ~ 50356404 (+)

Expression


Co-expression Network