AMCG00008255


Basic Information

Item Value
gene id AMCG00008255
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48411085 ~ 48418933 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008255
ATGCGTAGTAACCCAGGAAACGTCCTCATAAAGGCTTCCTACAACGTGTGGACTTTCTTTCACTGCTGCACTGTGAGCAGACCTGCTAGAACCATGGTGGCTGCAGTTGGAGCTTTGCCTCTGGGGATGTGTGGATTGGTGCCTCTGGTTGAAGTGGCTTCTGGGTGGCATATTGCTGATTACTGTGCTAGCATGTTTGCTGCAGTAAGTTCCCATGAATCTCTGAGCCACGCGCTGAGGGCCGAGGAGGGTGTGGAGGGTGTGAAGACCACACTGGTGTGCCCCTACATTGTGGACACTGGCATGTTCATCCGCTGCAAGGTCAGGTAA
>TU37077
AAGGCTTCCTACAACGTGTGGACTTTCTTTCACTGCTGCACTGTGAGCAGgatTCTTGTTAATGAAAATGGTATTGAATGTGCAGAAATTGCAATGGGAGATCAGACTGAAAGATCCGTACCTGGGATTGTGACTTTGATTAAGAATTCATCTGTGGTTTTCCCTTGGGATGCCTATGCCATTAAGACTGGGGATAAGCGTCCTGGCTAAAGTTGGAACAATGTCTCTTGGTGCCGTATAGATACTAGGTATCACCATGGTGGCTGCATTTGGAGAATCTTTGGGTACCATATAGATACCTGCTAGAACCATGGTGGCTGCAGTTGGAGCTTTGCCTCTGGGTACCATATAGATGGATGTGTGGATTGGTGCCTCTGGTTGAAGTGGCTTCTGGGTGGCATATTGCTcATCAAGGCTGGAGATCTGCTCTTCCCAGCAGATGTAAAAGTTCAGGTTCTATTCAACCTTCAATGAGATCTTGATGTATTGAATTCAGCCATTTAATgtaatgctgtttttgtatgagTTTAGTTAAAATgaccttttcagttttttttgtaacagTTGTCCTGTTAAACCTTTTGCAAcgcatgtaaaataaacaactttatCTCCCAG
>TU37078
AAGGCTTCCTACAACGTGTGGACTTTCTTTCACTGCTGCACTGTGAGCAGgatTCTTGTTAATGAAAATGGTATTGAATGTGCAGAAATTGCAATGGGAGATCAGACTGAAAGATCCGTACCTGGGATTGTGACTTTGATTAAGAATTCATCTGTGGTTTTCCCTTGGGATGCCTATGCCATTAAGATTACTACTGACTGGGTGGCCAGGTGCTCTGATAAACCAGCTGAGAAATCTGGAGTACTCTTGCAAATAAAGCATAATTTTTTTTGCAGACTGGGGATAAGCGTCCTGGCTAAAGTTGGAACAATGTCTCTTGGTGCCGTATAGATACTAGGTATCACCATGGTGGCTGCATTTGGAGAATCTTTGGGTACCATATAGATACCTGCTAGAACCATGGTGGCTGCAGTTGGAGCTTTGCCTCTGGGTACCATATAGATGGATGTGTGGATTGGTGCCTCTGGTTGAAGTGGCTTCTGGGTGGCATATTGCTcATCAAGGCTGGAGATCTGCTCTTCCCAGCAGATGTAAAAGTTCAGGTTCTATTCAACCTTCAATGAGATCTTGATGTATTGAATTCAGCCATTTAATgtaatgctgtttttgtatgagTTTAGTTAAAATgaccttttcagttttttttgtaacagTTGTCCTGTTAAACCTTTTGCAAcgcatgtaaaataaacaactttatCTCCCAG
>TU37079
AAGGCTTCCTACAACGTGTGGACTTTCTTTCACTGCTGCACTGTGAGCAGGTAAGATGGGGGTAGTCATCCAGTGTGATCTTGcataacaatatttataaaaatcatGTGTGCACACGAAGTTACTTTTCTGATTGTGTTAAAGCTACGGATCAATATACAATACCGTATATTAATCTCTTTCGATGTATATAATGCGATTAAATGGACGAGTTATAAAATTCTGCTACATAAACATGCCtgctatattaaatataatgtatcaaGCAATAGATCAGTTTTCTACagtttaggaaaaaaaacacgtttTCAAGGAAGCCCTTAAGTCACGTACTCCTTCGCTCGCACACGTGTAGGCTGCTGTACTACTGATCGCCATTGCTAAACAGTTTAAATCTAATTTCGTTTACTTTTAACTTGTATCGCAGCACGTTGTTTCAATAAAGCTCTATACTTACTGCAGTGATCTTTTTCCATCTCATTTCAAATGTGCACTTTTCAATCTGTCTGTTTAAAACTGGATTACAATCGCGTAGTCGGCCAATGAAACTACATGAAGAGGAATTGCTTTCTATAGAGTGTATCGATTTAAATCTCCAACTTCTGTACCTATGGCAGTGTTAATCAAATATCAATCATCCCAAGGGTCCAATGTTAAATCTTTAGAATAACAACTGATCGCACGAAAATAACGAGTACTAGCGGTTGTAAGGACATTCTGAGAACTGATTTATGAAGTattgatgtaatttaattgaatgtaagcATTAATaactattaaatgtaataagatatatatatatatttatggatgttttatattaatcagTCTTTACATCTGTAATGAAATCATATCAAGTTTCTATAAGCATAGCCTTGCCTAGAAAGATCATTGTTCAGATGTGGCTGAgaatcaaatgttttgcttgtaataaatgcattttgcagTCTTCATTTGTATgcacaacaaaacatgtatattgtCGTGACTATAAGGAAGATTACCTGAATTTAAAATGGTTCCTCTAAGGTAAATGTGTTCGTTATACAAGTAATAGCTACCaattcttgatttattttgcaggatTCTTGTTAATGAAAATGGTATTGAATGTGCAGAAATTGCAATGGGAGATCAGACTGAAAGATCCGTACCTGGGATTGTGACTTTGATTAAGAATTCATCTGTGGTTTTCCCTTGGGATGCCTATGCCATTAAGACTGGGGATAAGCGTCCTGGCTAAAGTTGGAACAATGTCTCTTGGTGCCGTATAGATACTAGGTATCACCATGGTGGCTGCATTTGGAGAATCTTTGGGTACCATATAGATACCTGCTAGAACCATGGTGGCTGCAGTTGGAGCTTTGCCTCTGGGTACCATATAGATGGATGTGTGGATTGGTGCCTCTGGTTGAAGTGGCTTCTGGGTGGCATATTGCTcATCAAGGCTGGAGATCTGCTCTTCCCAGCAGATGTAAAAGTTCAGGTTCTATTCAACCTTCAATGAGATCTTGATGTATTGAATTCAGCCATTTAATgtaatgctgtttttgtatgagTTTAGTTAAAATgaccttttcagttttttttgtaacagTTGTCCTGTTAAACCTTTTGCAAcgcatgtaaaataaacaactttatCTCCCAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008255 False 330 mRNA 0.53 4 48411085 48418933
TU37077 False 618 lncRNA 0.42 8 48415003 48418903
TU37078 False 707 lncRNA 0.42 8 48415003 48418903
TU37079 True 1651 lncRNA 0.36 7 48415003 48418903

Neighbor

gene id symbol gene type direction distance location
AMCG00008254 pard6g,LOC107702404,LOC105910269,LOC108410561,LOC107754812,LOC107672872,LOC106570232 coding downstream 208623 48042673 ~ 48202462 (-)
AMCG00008244 sys1 coding downstream 523786 47882297 ~ 47887299 (-)
AMCG00008240 ssr1,LOC108424590 coding downstream 618564 47783301 ~ 47792521 (-)
AMCG00008237 NA coding downstream 668723 47717707 ~ 47742362 (-)
AMCG00008236 elmo2,LOC106583331,LOC106565399 coding downstream 734335 47642979 ~ 47676750 (-)
AMCG00008258 LOC100703625,LOC102206431,LOC101476705,LOC103360233,LOC102296182,LOC105026470 coding upstream 65462 48484395 ~ 48643942 (-)
AMCG00008257 NA coding upstream 255595 48674528 ~ 48697834 (-)
AMCG00008260 NA coding upstream 419215 48838148 ~ 48839345 (-)
AMCG00008259 NA coding upstream 441222 48860155 ~ 48861604 (-)
AMCG00008261 NA coding upstream 725240 49144173 ~ 49169545 (-)
G29595 NA non-coding downstream 78143 48332108 ~ 48332942 (-)
G29583 NA non-coding downstream 113786 48295053 ~ 48297299 (-)
G29530 NA non-coding downstream 380172 48027717 ~ 48030913 (-)
G29521 NA non-coding downstream 398130 48008657 ~ 48012955 (-)
G29410 NA non-coding downstream 880426 47530432 ~ 47530659 (-)
G29656 NA non-coding upstream 146734 48565667 ~ 48653934 (-)
G29673 NA non-coding upstream 313327 48732260 ~ 48732591 (-)
G29676 NA non-coding upstream 343039 48761972 ~ 48762297 (-)
G29694 NA non-coding upstream 414606 48833539 ~ 48833822 (-)
G29695 NA non-coding upstream 423418 48842351 ~ 48842613 (-)
AMCG00008256 arfgef2 other downstream 119642 48202621 ~ 48291443 (-)
G29544 LOC100846954 other downstream 286403 48123925 ~ 48124682 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other downstream 492623 47666642 ~ 47918462 (-)
AMCG00008233 NA other downstream 804073 47580139 ~ 47607012 (-)
G29361 NA other downstream 1929187 46480946 ~ 46481898 (-)
AMCG00008264 NA other upstream 756792 49175725 ~ 49253244 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other upstream 1078467 49497400 ~ 49537281 (-)
G29928 NA other upstream 1377038 49795971 ~ 49905089 (-)
G29974 LOC101154678 other upstream 1634892 50053825 ~ 50054102 (-)
G30054 NA other upstream 1854805 50273738 ~ 50274183 (-)

Expression


Co-expression Network