AMCG00008256 (arfgef2)


Basic Information

Item Value
gene id AMCG00008256
gene name arfgef2
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48202621 ~ 48291443 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008256
ATGCAGTACAACCCTGGCTACCTTGTCATCTGTGAGTTTCAGCGTCTTGGtgagcaggaggaggagcaggtTGGTCCAGGCTTCTCGGTGGCTCTCAGACGTCAGAGTAATGAAGTAAGCCAGCGCCTCACTGCACACCCTGAGGGAAAGGAAAATTCAGTGAAACTCTTCTACATATCTCCTACCATCCGAGATATGGTGATCCGCTGCATTGCTCAAATGGTCAACTCTCAGGCTGCAAACATCCGCTCCGGctggaaaaacatattttccgTCTTCCACCAGGCTGCCTCTGACCATGACGAGACCATCGTGGAGCTGGCTTTCCAGACCACGGGACACATTGTTGTAAGCACTTTTCAGAGACATTTCGGAGCAGCTATAGACTCATTCCAGGATGCGGTCAAATGCCTGTCTGAGTTCGTCTGTAATGCAGCCTTCCCTGACACCAGTATGGAAGCAATACGACTCATCCGGCACTGTGCAAAATATGTCTCGGAAAGGCCTCAGGCCTTGCGTGAGTACACCAGTGATGATATGAATGTAGCTCCTGGAGACCGGGTCTGGGTTCGAGGATGGTTCCCTATTCTTTTTGAGCTGTCCTGTATTATAAACCGTTGCAAGCTAGATGTCCGAACACGGGAGGCATGGGTCCCGCTGCTGCCGATGCCAGAGGACACAGTGGAGTCCAGTGAGCTGGCACTGTCTCTACGTGCCAGGGAGTCCAGGGGCTTGTTCTCTGCACTCTCCAGTTCAGATGACCTCTCCTGGCCTGCGGAGGATGTCTGGTTCTGCTGTGGAAGTGTCTGTCAGGTGGTGTGTGCCAGAGACAGGCTGTGCTGGACGGGAGAACGGGGGCTAACACCGGCATCGGCAAGGGAATGGCACACGACCTCGCCCAGTGAGCGCGCCGCGCGCCCCGGAAAGCCAGGAGCGCGCGCAGGTGCCGCCGTGAGCCGCGAGACGGGCGCGCGCGGGGCGGAAACGAGGCTGGCCTGGAGCCGCTTCCTGGGTGCGGATTGCGTCACCGGCCGAGGCGCTgcgaggagggagggagagactgagacagagagagagtttgaAAGCAGGTTGTTGTCAGGCGGAGGCGTCTAG
>TU37036
aacctaactcTTATTTGTGTCTAAGctacacataaacacagcatTTAAATCACATTGGATTCAATTACATGTATAGTTCAACGGCCCtttctttgcattttccatattgttttctgaaattGATGATGGTGTGTTTCAGATCTCCTACCATCCGAGATATGGTGATCCGCTGCATTGCTCAAATGGTCAACTCTCAGGCTGCAAACATCCGCTCCGGctggaaaaacatattttccgTCTTCCACCAGGCTGCCTCTGACCATGACGAGACCATCGTGGAGCTGGCTTTCCAGACCACGGGACACATTGTTGTAAGCACTTTTCAGAGACATTTCGGAGCAGCTATAGACTCATTCCAGGATGCGGTCAAATGCCTGTCTGAGTTCGTCTGTAATGCAGCCTTCCCTGACACCAGTATGGAAGCAATACGACTCATCCGGCACTGTGCAAAATATGTCTCGGAAAGGCCTCAGGCCTTGCGTGAGTACACCAGTGATGATATGAATGTAGCTCCTGGAGACCGGGTCTGGGTTCGAGGATGGTTCCCTATTCTTTTTGAGCTGTCCTGTATTATAAACCGTTGCAAGCTAGATGTCCGAACACGG

Function

symbol description
arfgef2 Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within with a positive effect on angioblast cell migration and cell migration involved in sprouting angiogenesis. Predicted to be located in Golgi apparatus and perinuclear region of cytoplasm. Is expressed in brain. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ARFGEF2 (ADP ribosylation factor guanine nucleotide exchange factor 2).

NR:

description
PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008256 True 1113 mRNA 0.57 7 48202621 48291443
TU37036 False 605 TUCP 0.46 3 48281342 48283213

Neighbor

gene id symbol gene type direction distance location
AMCG00008254 pard6g,LOC107702404,LOC105910269,LOC108410561,LOC107754812,LOC107672872,LOC106570232 coding downstream 159 48042673 ~ 48202462 (-)
AMCG00008244 sys1 coding downstream 315322 47882297 ~ 47887299 (-)
AMCG00008240 ssr1,LOC108424590 coding downstream 410100 47783301 ~ 47792521 (-)
AMCG00008237 NA coding downstream 460259 47717707 ~ 47742362 (-)
AMCG00008236 elmo2,LOC106583331,LOC106565399 coding downstream 525871 47642979 ~ 47676750 (-)
AMCG00008258 LOC100703625,LOC102206431,LOC101476705,LOC103360233,LOC102296182,LOC105026470 coding upstream 192952 48484395 ~ 48643942 (-)
AMCG00008257 NA coding upstream 383085 48674528 ~ 48697834 (-)
AMCG00008260 NA coding upstream 546705 48838148 ~ 48839345 (-)
AMCG00008259 NA coding upstream 568712 48860155 ~ 48861604 (-)
AMCG00008261 NA coding upstream 852730 49144173 ~ 49169545 (-)
G29530 NA non-coding downstream 171708 48027717 ~ 48030913 (-)
G29521 NA non-coding downstream 189666 48008657 ~ 48012955 (-)
G29410 NA non-coding downstream 671962 47530432 ~ 47530659 (-)
G29403 NA non-coding downstream 792571 47409787 ~ 47410050 (-)
G29397 NA non-coding downstream 1081243 47118637 ~ 47121378 (-)
G29583 NA non-coding upstream 3610 48295053 ~ 48297299 (-)
G29595 NA non-coding upstream 40665 48332108 ~ 48332942 (-)
G29656 NA non-coding upstream 274224 48565667 ~ 48653934 (-)
G29673 NA non-coding upstream 440817 48732260 ~ 48732591 (-)
G29676 NA non-coding upstream 470529 48761972 ~ 48762297 (-)
G29544 LOC100846954 other downstream 77939 48123925 ~ 48124682 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other downstream 284159 47666642 ~ 47918462 (-)
AMCG00008233 NA other downstream 595609 47580139 ~ 47607012 (-)
G29361 NA other downstream 1720723 46480946 ~ 46481898 (-)
G29301 NA other downstream 2148275 46050695 ~ 46054346 (-)
AMCG00008255 NA other upstream 119642 48411085 ~ 48418933 (-)
AMCG00008264 NA other upstream 884282 49175725 ~ 49253244 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other upstream 1205957 49497400 ~ 49537281 (-)
G29928 NA other upstream 1504528 49795971 ~ 49905089 (-)
G29974 LOC101154678 other upstream 1762382 50053825 ~ 50054102 (-)

Expression


Co-expression Network