AMCG00008270 (ttpal)


Basic Information

Item Value
gene id AMCG00008270
gene name ttpal
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49288246 ~ 49295359 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008270
ATGGCAGAAAGGTACCTTCTCCATGGCTCCGACCTGAACTCACTGCACAAGACCATCCCTTGTTCAGTGCTTCCTGAGGAGTATGGAGGCATGGCCGGGCAACTGGAGACAACAGTCTGGTCCCAAGCACTGTTGGACTCTGAGGAGGAGTTTGTTGTGGAGTTCTGCCAACCTGACCCATTGGAGGGCCTGGACCTCTCTGACTCGCTGCTATTTGCAGGCGAACATGCCAGCGCACAGTGCGATGACTACAGGGGAGTGCGCTCCCAGTTGTACTATTGTTACTGA
>TU37252
aacacagtattagtatggtgttcctaataatcctttaggtgagtgtagattgaGGTGCTCCGTGAACAAAGGGCGTAGTGCActgcaatgttttaaattggACTGCTGCTACCTTGTGACTACCAAGTTTAAAAATTGTATCGACAGTAtgccaaataaatgaaaattagCTTTCTCCTATCTGTCATTTCTATAATAGTTAGGACTATTTTTTGGttcatgtgaaaaaataaacactgtgcctaaaagtaacaaataaagaaaaacctgaTAACCCTAGCTGGCTAGGCAGTAAACTTCAGTGCAGCCTGCAGAGTACAGTTGCTGGGATCTgctaaatcttttttttgtataaatataggAAAGTGGAAACCCACTGATTACCCGTTTGTAGACAATGTCCGGGCTATATACCTCACCCTAGAGAAGCTGATTCAACCTGAGGAGACCCAGGTGAATGGCATTGTCATTCTCGCAGACTACAATGGGGTTGGCTTGACTCAGGCATCTAACCTGGGCCCCTTCCTCGCAAAGAAGGTTGTGGGTATTCTTCAGGATGGATTTCCAATTAGAATCAAGGCAGTCAATATAATAAACGAACCCAGGATTTTCAAGGGAATTTTTGCAATCATAAAGCCTTTTCTCAAGGAGAAGATGGCAGAAAGGTACCTTCTCCATGGCTCCGACCTGAACTCACTGCACAAGACCATCCCTTGTTCAGTGCTTCCTGAGGAGTATGGAGGCATGGCCGGGCAACTGGAGACAACAGTCTGGTCCCAAGCACTGTTGGACTCTGAGGAGGAGTTTGTTGTGGAGTTCTGCCAACCTGACCCATTGGAGGGCCTGGACCTCTCTGACTCGCTGCTATTTGCAGGCGAACATGCCAGCGCACAGTGCGATGACTACAGGGGAGTGCGCTCCCAGTTGTACTATTGTTACTGACATGCTCTGCTACATACACACAGGGCGCTACTGTTCTTGTGTCCAAACACATACAGCACCTTATCTTCTCGCAATTCAAGTGTTACGCTTCTTAATTGGATTAGCGGTGGCAGCCCTTTTCACAGATCAAGATCAAAGGGCTTTGTACCCTAATGGTGGTTAGTTGATCACTGAAGACAGCCACCACTAGTAAACAACATTTTCCTAGCCTTATATTGTTAAACAGTATACCCTCAAAAACCAATACAACTTTGCATATGTCTTAAGAACACACCATAAAAAAACTAGGATATAACTGTTGATGCTTATATAACTGTTGATGCTTATATAGCTGCTATGTTAGGCCAGACAGATCTGGATGATTCTGCACCTGCACAAAACATATCAAGTGCTTCAAGTTGGTGATACCAGTTAAGATGAAAAAGTGACACAACTGGAAAACTTTCAGTAAGAACaggttttgttgtgttgttttaagcatttcttcttacaaaatgttaaaatgacagcCAAATTAATTGATCAACTTATTGTTGACTAGGCCCGTCTTTATATTgtatcaacatttatttttatatatatatatatatatatatatatacacaaatagtGTTGTTGACATACTGTACCCAAGGTGTGTAATGTTTTTACAGAACAGTACTACTCCACTGCAATAACAGATATGCATACTTTATGGAAAAAAAGGAagtagtcttttttttattgagaatACATCATTCTTCTAAATAGGAGCTTCATATGAAGAATGACTGTAAATGAGGTTAGATCACTAAAATGGGTCATAAAAAAGGCATTCACAACTTGTGAAACAGACATGCtttatgttatttttgaatTCCGCATCTCCTGAAggattgaagaaaaaacaaactactcTGTATTCGTGTAACAATCCTGAAGCTATGTCCCAGATGAACCAGCAAACAACCTATGCAGCCTTTATAATTGCCTGAGTGAGAATTACAGTAAAAGCAAATGGTgaattttttctcttttgaatCAGTCGGTCAAGAGGGAAAATGTAACCTCAATTGGATTTGGTTAAAATCTATTCTTAAAGTAAATCCGTAGCTCCAAGAGACCCAAGAAGCTTATTTTGTCTGCTGCATTTCAGCTTTGACAACTCTAACCCACTGTATTTTCAGCTATAATAGTAGTGTGCTCTTGTAATCAAAGAGTATTGAATTAAGTGGATTTCAGTTCAGTGTCCCTGACTCACAGAGGCTAATGAATGTTATAGTTATGGCAAAAAAAAAGGCTTGGGTCCTCATTCATTCACATTACTTTCttaggagggaaaaaaaattaaacattcagtaaataatacaatccaTTTCCTAATAGTTTAGACTATGGTGAGAAATTATTTTCAGTGCTACAAAATTCAGAGAGAGACTGGGAAAGATTGAAGCACAGTGATTAATTTCTTCCAGCAGTACTACTTAATCCTAAGGAATTGTGTGACAATGGGTGTTTTCATTCACTGACCTCTTGGGGCAGCATTTTGCACTAAATGTTGCTTGTAAGAGTACTTGAATGCCAGGATAATATTAGAACataggaaagtttacaaacgagaggagaccattcgacccatcatgctcgtttggtgtccattaataactaagtgatccaaggatcctatccagtctatttttaaatgttcccaaattttcaggtTCAATCACTGGGGagattgttccagattgtgacaactctgtgtgaagaagtgtctcctgttttccgtcttgaatgcctcgaagcccaatttccatttgtgtccgtgggtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgactttgaagacttgaatcaagtccacACGTAGTCTcctccagggtgaaaaggttcagttccttcagtctctctgagtaggacattcccttcaaacctgcaataagtctggttgctcgcctctaaactgcctctagagcagcgatatccttcttgaaatgtggtgcccagaactgtacacagtatcccagatgaggtctaactagtgcattgtacagtcttaatatcacttcccttgttttaaattctacacttttgacaatataccctagtattctgtttgccttttttattgcttccccatattgtttggatggggagagtctacatagactcctagatctttctcatgcattacttcatctagttctattcctcccatagtgtaattatagtggacatttttgttacctgcatgtaataccttggcacttgtccacattgaatttcatctgccaggtgttggcccacaactgaatattatccaagtccctttgaatagcatGTGAtagtatctgctgagccacctattttagtatcatctgcaaatttgacaagtttgctaactatcccagagtccagatcattaatatagattagaaaaagcaaaggccctagtactgatccccatggaactccactaacaacctcactccagttagaagcaactcctctaaattacaccctctgtttcctatacattaatcagttcataatccatctacttacattaccctgaatacccacagcttccaatttgaggatcagtctttggtgtggaaccttatctaaagctttctgaaaatctaagtatatcatatcatatgctttcacatgatttaCAGCTGCAGATGCATGttaaaaaactacaataaattagtaagacatgatctttcattaagatgctcctctactttctgtctaatcattttctccaacattttacaggtgatgcaggtaagactgattggtctgtaatttcctggctcagttttatcccttcttgtggattggtgtgacatttggcgtcttccagtcagttggcagtgtcttttggaatatttgagttagcggcctaaaaataatttctctaatttctttaagtactgttggacatataccatctggcccaggtgatttgtttgtttttaattctgctagtccctttagtacctcctcctcatttatcctgatttcTCTTAGgcttgactggactgattgttaaccattttgcattttatcagttttttcttttgtaaaaacctctgtgaaatatttgccacatcttattcgttttctaagatacctcaatttttcccctttgtttcacttcctcctttattgacctcttgctgttgtagtatttaaaaagtattttgcatacttctattaaagcATTTGGGACAATTTTTTTTGGTCCTCGATTTGGtaagttttggtaca

Function

symbol description
ttpal Predicted to enable phosphatidylinositol bisphosphate binding activity. Orthologous to human TTPAL (alpha tocopherol transfer protein like).

NR:

description
PREDICTED: alpha-tocopherol transfer protein-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008270 False 288 mRNA 0.55 2 49289241 49292055
TU37252 True 4246 lncRNA 0.39 3 49288246 49295359

Neighbor

gene id symbol gene type direction distance location
AMCG00008262 stk35,LOC105016730,LOC106583621,LOC103372836,LOC104935842 coding upstream 348151 48923864 ~ 48940095 (+)
AMCG00008250 NA coding upstream 813714 48462293 ~ 48474532 (+)
AMCG00008253 stau1 coding upstream 912175 48347747 ~ 48376071 (+)
AMCG00008252 cse1l coding upstream 962108 48292639 ~ 48326138 (+)
AMCG00008251 arfgef2,LOC106532188 coding upstream 1012898 48235687 ~ 48275348 (+)
AMCG00008272 NA coding downstream 173930 49469289 ~ 49471615 (+)
AMCG00008280 jph2,LOC107707015,LOC108275945 coding downstream 254547 49549906 ~ 49560080 (+)
AMCG00008281 NA coding downstream 291708 49587067 ~ 49596793 (+)
AMCG00008283 NA coding downstream 584620 49879979 ~ 49881352 (+)
AMCG00008291 NA coding downstream 1063628 50358987 ~ 50359865 (+)
G29747 NA non-coding upstream 96030 49137516 ~ 49192216 (+)
G29748 NA non-coding upstream 141021 49139140 ~ 49147225 (+)
G29742 NA non-coding upstream 182802 49105213 ~ 49105444 (+)
G29722 NA non-coding upstream 321026 48966956 ~ 48967220 (+)
G29692 NA non-coding upstream 467552 48820475 ~ 48820694 (+)
G29813 NA non-coding downstream 48679 49344038 ~ 49348022 (+)
G29823 NA non-coding downstream 73286 49368645 ~ 49379374 (+)
G29848 NA non-coding downstream 220125 49515484 ~ 49938346 (+)
G29853 NA non-coding downstream 249003 49544362 ~ 49544731 (+)
G29877 NA non-coding downstream 501085 49796444 ~ 49797983 (+)
AMCG00008263 NA other upstream 117229 49163816 ~ 49171017 (+)
AMCG00008249 NA other upstream 1346492 47929667 ~ 47941754 (+)
AMCG00008241 LOC106596195,LOC106601018,LOC105896344,LOC105896343 other upstream 1370118 47913868 ~ 47918128 (+)
AMCG00008242 hsp70.2,LOC108441608,LOC105896344,LOC105896343 other upstream 1396175 47863569 ~ 47892071 (+)
AMCG00008238 hsp70l,hsp70.3,LOC105896343,LOC105896344 other upstream 1571664 47664517 ~ 47716582 (+)
AMCG00008271 NA other downstream 109497 49404856 ~ 49418746 (+)
AMCG00008279 NA other downstream 544153 49839512 ~ 49858576 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other downstream 1027354 50322713 ~ 50356404 (+)
G30166 NA other downstream 2131222 51426581 ~ 51428055 (+)
G30232 NA other downstream 2805403 52100762 ~ 52101524 (+)

Expression


Co-expression Network