AMCG00008273 (gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014)


Basic Information

Item Value
gene id AMCG00008273
gene name gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49497400 ~ 49537281 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008273
ATGGATGAGGACGGTAAAATCACGGATGGGGAGGAGAGCCAAGAACCCGGTGCAGATTGTAAACCCAGCTCGAAAGACAGACTTGTTTTGTACCACTGGACGCAGTCTTTCAGCTCACAAAAGgTTCGTCTGGTGATCAATGAGAAGGGTTTGATTTGTGATGAGCGGGATGTGAGCCTACCCCTGACAGAGCACAAGGAGCCCTGGTTTATGCGGCTCAATCTGGGCGAGGAGGTACCAGTCTTGATCCACGGCGACACCATTGTCAGTGACTACAACCAGATTATTGATTACTTAGAGAAAAACTTTGTGGGAgAGAATATCGCAGCCCTCATCCCTGAAGCTGGCACTCCTCTCCACGCTCGAGTGCTGCAGTACAGAGAGCTCCTGGATACCCTGCCGATGGATGCCTACACACATGGCTGCATCCTGCACCCCGAGCTCACCACTGACTCCATGATCCCAAAGTACGCCACTGCTGAAATACGTATCTCCATCTGA
>TU37411
ctctcccatacactcacacatacacatactcaCAAACACTCTGTCATGGCGTCTTCCAACAATGTTACCCCTACCAACTGTAGTTGGTGGCCAATTTCAGCCATGGATGAGGACGGTAAAATCACGGATGGGGAGGAGAGCCAAGAACCCGGTGCAGATTGTAAACCCAGCTCGAAAGACAGACTTGTTTTGTACCACTGGACGCAGTCTTTCAGCTCACAAAAGGCTTGATGGGACCCCAAGACACAACAGCATGAATGGGTAAGCGGCAAGAACACAAACCACATACAGGTCATAGAACCAGGAGCTGCCACCAGAGGTGAGCGAGGAAGACAGCTAAAAGTCCAGGGTCTAAAGTGCAAATGCAAATCTTATCCAAGACAACCATAGACTGTCACTGCCACTTCCTATGgtgtatttaataaagtattCCACCAATGCCATgtctacagtgcatccggaaagtattcacagcgcttcactttttccacattttgttatgttacagccttattccaaaattgattaaattcattattttcctcaaaattctacaaacaatactccataatgacaacgtgaaag
>TU37412
ctctcccatacactcacacatacacatactcaCAAACACTCTGTCATGGCGTCTTCCAACAATGTTACCCCTACCAACTGTAGTTGGTGGCCAATTTCAGCCATGGATGAGGACGGTAAAATCACGGATGGGGAGGAGAGCCAAGAACCCGGTGCAGATTGTAAACCCAGCTCGAAAGACAGACTTGTTTTGTACCACTGGACGCAGTCTTTCAGCTCACAAAAGGCTTGATGGGACCCCAAGACACAACAGCATGAATGGGTAAGCGGCAAGAACACAAACCACATACAGG

Function

symbol description
gdap1l1 Predicted to act upstream of or within glutathione metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GDAP1L1 (ganglioside induced differentiation associated protein 1 like 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008273 False 501 mRNA 0.52 4 49497400 49537179
TU37411 True 585 lncRNA 0.44 4 49524742 49537281
TU37412 False 292 lncRNA 0.49 3 49525241 49537281

Neighbor

gene id symbol gene type direction distance location
AMCG00008268 gdap1l1,LOC102776784 coding downstream 18323 49478333 ~ 49479077 (-)
AMCG00008269 NA coding downstream 82275 49413392 ~ 49415125 (-)
AMCG00008267 hnf4a,LOC107737506,LOC107673078,LOC107568408 coding downstream 135889 49345488 ~ 49361511 (-)
AMCG00008266 NA coding downstream 173397 49299533 ~ 49324003 (-)
AMCG00008265 ttpal,LOC107673079,LOC107716173 coding downstream 216402 49269620 ~ 49280998 (-)
AMCG00008274 NA coding upstream 116289 49653570 ~ 49661750 (-)
AMCG00008275 NA coding upstream 172585 49709866 ~ 49711609 (-)
AMCG00008277 NA coding upstream 201774 49739055 ~ 49752628 (-)
AMCG00008276 slc13a3,LOC106572485 coding upstream 235833 49773114 ~ 49775968 (-)
AMCG00008278 NA coding upstream 300915 49838196 ~ 49840087 (-)
G29834 NA non-coding downstream 80186 49411356 ~ 49417214 (-)
G29827 NA non-coding downstream 95142 49402049 ~ 49402258 (-)
G29826 NA non-coding downstream 96528 49400650 ~ 49400872 (-)
G29825 NA non-coding downstream 96921 49400169 ~ 49400479 (-)
G29806 NA non-coding downstream 168560 49328573 ~ 49328840 (-)
G29904 NA non-coding upstream 54997 49592278 ~ 49621960 (-)
G29908 NA non-coding upstream 72842 49610123 ~ 49614420 (-)
G29926 NA non-coding upstream 249050 49786331 ~ 49787892 (-)
G29957 NA non-coding upstream 437145 49974426 ~ 49974646 (-)
G29987 NA non-coding upstream 588359 50125640 ~ 50126131 (-)
AMCG00008264 NA other downstream 244156 49175725 ~ 49253244 (-)
AMCG00008255 NA other downstream 1078467 48411085 ~ 48418933 (-)
AMCG00008256 arfgef2 other downstream 1205957 48202621 ~ 48291443 (-)
G29544 LOC100846954 other downstream 1372718 48123925 ~ 48124682 (-)
AMCG00008245 si:ch211-199o1.2,LOC105896344,LOC105896343,LOC108441608,LOC107668030,LOC108418094,LOC101067989 other downstream 1578938 47666642 ~ 47918462 (-)
G29928 NA other upstream 258690 49795971 ~ 49905089 (-)
G29974 LOC101154678 other upstream 516544 50053825 ~ 50054102 (-)
G30054 NA other upstream 736457 50273738 ~ 50274183 (-)
AMCG00008298 NA other upstream 986706 50523987 ~ 50528036 (-)
AMCG00008318 NA other upstream 2791955 52329236 ~ 52339097 (-)

Expression


Co-expression Network