AMCG00008276 (slc13a3,LOC106572485)


Basic Information

Item Value
gene id AMCG00008276
gene name slc13a3,LOC106572485
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49773114 ~ 49775968 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008276
GAAGGAAAATGCCTGTACGTGGTGCTCTTGATGGCTATGTTTTGGTGCACAGAGGCCCTTCCTCTTGCTGTTACAGCCAcactccctgtctgtctcttccCTCTACTGGGAATCCTGCCTTCCCACAAAGTGTGCCCACAGTACTTCCTCGATACCAACTTCCTCTTCTTTAGTGGACTGGTGATGGCGTCTGCCATTGAAGAGTGGAACCTGCATCGCCGAATTGCTCTGCGGGTCCTGATGATTGTGGGGGTAAAACCAGCCTGGCTGATCCTGGGAATGATGCTGACCACGGCCTTCCTGTCCATGTGGCTCAGTAACACCGCCACCACTGCCATGATGCTACCCATTGCCAATGCTATCCTGGAGAGCTTGTTTGGAGACCTGGAGACTCTGAAGCGCAACTGCCGACTAGCGGACGACTCGGAG

Function

symbol description
slc13a3 Predicted to enable citrate transmembrane transporter activity; sodium:dicarboxylate symporter activity; and succinate transmembrane transporter activity. Predicted to be involved in anion transmembrane transport and citrate transport. Predicted to act upstream of or within sodium ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; hatching gland; head; kidney; and periocular mesenchyme. Orthologous to human SLC13A3 (solute carrier family 13 member 3).

NR:

description
PREDICTED: solute carrier family 13 member 3-like isoform X2

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008276 True 429 mRNA 0.54 2 49773114 49775968

Neighbor

gene id symbol gene type direction distance location
AMCG00008277 NA coding downstream 20486 49739055 ~ 49752628 (-)
AMCG00008275 NA coding downstream 61505 49709866 ~ 49711609 (-)
AMCG00008274 NA coding downstream 111364 49653570 ~ 49661750 (-)
AMCG00008268 gdap1l1,LOC102776784 coding downstream 294037 49478333 ~ 49479077 (-)
AMCG00008269 NA coding downstream 357989 49413392 ~ 49415125 (-)
AMCG00008278 NA coding upstream 62228 49838196 ~ 49840087 (-)
AMCG00008282 NA coding upstream 171043 49947011 ~ 49987575 (-)
AMCG00008284 LOC105895941,LOC108424612,LOC108255211,LOC103042686,LOC104930306,LOC103375199,LOC101473264 coding upstream 220992 49996960 ~ 50029620 (-)
AMCG00008285 tcf15,LOC106567197,LOC107669611,LOC107594541 coding upstream 311125 50087093 ~ 50089767 (-)
AMCG00008286 NA coding upstream 340065 50116033 ~ 50119306 (-)
G29904 NA non-coding downstream 151154 49592278 ~ 49621960 (-)
G29908 NA non-coding downstream 158694 49610123 ~ 49614420 (-)
G29899 NA non-coding downstream 184309 49515484 ~ 49588805 (-)
G29834 NA non-coding downstream 355900 49411356 ~ 49417214 (-)
G29827 NA non-coding downstream 370856 49402049 ~ 49402258 (-)
G29926 NA non-coding upstream 10363 49786331 ~ 49787892 (-)
G29957 NA non-coding upstream 198458 49974426 ~ 49974646 (-)
G29987 NA non-coding upstream 349672 50125640 ~ 50126131 (-)
G30003 NA non-coding upstream 409064 50185032 ~ 50185277 (-)
G30049 NA non-coding upstream 475742 50251710 ~ 50251922 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other downstream 235833 49497400 ~ 49537281 (-)
AMCG00008264 NA other downstream 519870 49175725 ~ 49253244 (-)
AMCG00008255 NA other downstream 1354181 48411085 ~ 48418933 (-)
AMCG00008256 arfgef2 other downstream 1481671 48202621 ~ 48291443 (-)
G29544 LOC100846954 other downstream 1648432 48123925 ~ 48124682 (-)
G29928 NA other upstream 20003 49795971 ~ 49905089 (-)
G29974 LOC101154678 other upstream 277857 50053825 ~ 50054102 (-)
G30054 NA other upstream 497770 50273738 ~ 50274183 (-)
AMCG00008298 NA other upstream 748019 50523987 ~ 50528036 (-)
AMCG00008318 NA other upstream 2553268 52329236 ~ 52339097 (-)

Expression


Co-expression Network