AMCG00008278


Basic Information

Item Value
gene id AMCG00008278
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49838196 ~ 49840087 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008278
ATGGCTCTTGAAAAAGGGAAAGAAGCAGTCCGCCAGTTTCTCGATCGGCAAGAGTTGCTGAAGCAGGGCGCCGAAGCTCGGGTTTACCGGGGACGATTCCTGGGCAAAGCGGCGGTCATGAAGGAGAGGTTCCCGAAGCAATACCGACACCCGACCCTGGATGAAAAACTCACTCATCGCAGGACGGTCCAAGAGGTGCGCTCAATACTTCGATGCAGAAAAGCGGGTATATCGGCtcctgtagtttattttgttgacTACACGTCCCATTGCATCATTCTTGAAGAAATTGTGAAGTCGGCCACAGTTCGAGACCATATCACCTCAATGCAGGCCTCCGAAAAGGACTCTGAGAATCTCCACCCGTTAGCCGAGCAAATGGGGCAGATTTTGGCAAAGATGCATGATGAGGACGTCATTCATGGAGACCTGACAACCTCCAATATGCttctgaggagagagagtgaaggagggAAAGTGGACCTGGTGCTGATTGACTTTGGATTGAGCTGTATCTCGGCTTTGCCCGAGGACAAGGGTGTAGACCTGTATGTTTTGGAGAAGGCATTTTTGAGCACCCACCCGAACACAGAGGACGTCTTTGAGAGGCTACTGAAAAGCTACTCTGTCTCCTCAAAGAAATCAGCAGCTGTCATTAAAAAGCTGAACGAAGTGAGACTAAGGGGAAGGAAGAGGTCCATGGTAGGCTAG

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0009103 lipopolysaccharide biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K08851 TP53RK, PRPK, BUD32; TP53 regulating kinase and related kinases

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008278 True 711 mRNA 0.50 2 49838196 49840087

Neighbor

gene id symbol gene type direction distance location
AMCG00008276 slc13a3,LOC106572485 coding downstream 62228 49773114 ~ 49775968 (-)
AMCG00008277 NA coding downstream 85568 49739055 ~ 49752628 (-)
AMCG00008275 NA coding downstream 126587 49709866 ~ 49711609 (-)
AMCG00008274 NA coding downstream 176446 49653570 ~ 49661750 (-)
AMCG00008268 gdap1l1,LOC102776784 coding downstream 359119 49478333 ~ 49479077 (-)
AMCG00008282 NA coding upstream 106924 49947011 ~ 49987575 (-)
AMCG00008284 LOC105895941,LOC108424612,LOC108255211,LOC103042686,LOC104930306,LOC103375199,LOC101473264 coding upstream 156873 49996960 ~ 50029620 (-)
AMCG00008285 tcf15,LOC106567197,LOC107669611,LOC107594541 coding upstream 247006 50087093 ~ 50089767 (-)
AMCG00008286 NA coding upstream 275946 50116033 ~ 50119306 (-)
AMCG00008287 scrt2,LOC103139108,LOC102228875 coding upstream 307730 50147817 ~ 50155865 (-)
G29926 NA non-coding downstream 50304 49786331 ~ 49787892 (-)
G29904 NA non-coding downstream 216236 49592278 ~ 49621960 (-)
G29908 NA non-coding downstream 223776 49610123 ~ 49614420 (-)
G29899 NA non-coding downstream 249391 49515484 ~ 49588805 (-)
G29834 NA non-coding downstream 420982 49411356 ~ 49417214 (-)
G29957 NA non-coding upstream 134339 49974426 ~ 49974646 (-)
G29987 NA non-coding upstream 285553 50125640 ~ 50126131 (-)
G30003 NA non-coding upstream 344945 50185032 ~ 50185277 (-)
G30049 NA non-coding upstream 411623 50251710 ~ 50251922 (-)
G30051 NA non-coding upstream 420669 50260756 ~ 50261187 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other downstream 300915 49497400 ~ 49537281 (-)
AMCG00008264 NA other downstream 584952 49175725 ~ 49253244 (-)
AMCG00008255 NA other downstream 1419263 48411085 ~ 48418933 (-)
AMCG00008256 arfgef2 other downstream 1546753 48202621 ~ 48291443 (-)
G29544 LOC100846954 other downstream 1713514 48123925 ~ 48124682 (-)
G29974 LOC101154678 other upstream 213738 50053825 ~ 50054102 (-)
G30054 NA other upstream 433651 50273738 ~ 50274183 (-)
AMCG00008298 NA other upstream 683900 50523987 ~ 50528036 (-)
AMCG00008318 NA other upstream 2489149 52329236 ~ 52339097 (-)
AMCG00008325 znf341,LOC106566899 other upstream 2540969 52381056 ~ 52384567 (-)

Expression


Co-expression Network