AMCG00008280 (jph2,LOC107707015,LOC108275945)


Basic Information

Item Value
gene id AMCG00008280
gene name jph2,LOC107707015,LOC108275945
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49549906 ~ 49560080 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008280
ATGAGTGGCGGTCGCTTTGAATTTGATGACGGCGGAGCCTATTGTGGAGGCTGGGAAGGAGGCAAGGCGCACGGTCATGGCATCTGCACCGGCCCCAAAGGACAGGGAGAGTTCTCCGGCTCTTGGAACTATGGCTTTGAGGTGGTAGGGGTCTATACATGGCCCAGTGGAAACACTTACGAGGGTTACTGGTCCCAGGGAAAGCGCCACGGCTTAGGCGTGGAAACTAAGGGACGTTGGGTTTACAAGGGAGAATGGACACATGGGTTCAAAGGGAGATACGGTAGCCGTCTAAGCCAGGGCAGCGGCGCAAAGTACGAGGGGACCTGGAGTAATGGCTTGCAAGACGGATACGGCACCGAAACCTATGCCGATGGAGGTACTTACCAAGGGCAGTTCACAGGCGGCATGCGTCACGGTTACGGTGTGCGCCAGAGTGTCCCCTACGGGATGGCGGCGGTGGTGCGCTCCCCTCTCCGCACCTCCCTCACCTCCCTGCGCAGCGAGCACAGCAACGGCACCCTGCTGCAGCAGGACATCCCCGTCATCACCACCACAAATGCTGCTGGTCAAGAGACAGCCCTCAGCCCACCTTCCGCCAACCCCACCCGGGGGGGGTTTGCTCTTACCCTCTATGCAGACCCTGAAGCCATCAAGCCCAAGAAGAAGGGGCTGTTTCGCCGGGGATCGCTGCTGGGGAAGCTGAAGAAATCAGAATCAAGGACCTCCCTAGCCAGCCAGAAGAGCAAGGTCAGCTTCTTAAAGAGTGAGTCAGGGTTGAGTTCGGCTGCCAGTGACGCCAACTCCACCATCAGCCTGGGGGACGAGATGGAGGCTGGAGAGGATTTCCCCCCCGTGGAGTCTGATATCGATGCCACCACCACCGAGGTCTACACGGGCGAATGGAAGAATGACAAGCGCTCGGGGTACGGGGTGAGTGAGCGCTCCAGTGGCCTGAAATATGAGGGCGAGTGGCTGGACAACCAGCGACATGGCTACGGTTGCACTACCTTCCCTGAAGGCCGCAAGGAAGAGGGCAAGTACAGGAACAACGTGCTGGTCAAGGGCATGAAGAAAAGGGTCATCCCGCTTAAGAGCACCAAGATCCGGCAGAAAGTGGATCGCAGCGTGGAAGGTGCCCAGAGGGCAGCGGCCATCGCCAAGCAGAAAGCAGAGATTGCTGCCTCAAGGTAA

Function

symbol description
jph2 Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of junctional membrane complex. Predicted to be active in endoplasmic reticulum membrane; plasma membrane; and sarcoplasmic reticulum. Is expressed in adaxial cell; cardiovascular system; musculature system; and somite. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy 17. Orthologous to human JPH2 (junctophilin 2).

NR:

description
PREDICTED: junctophilin-2

GO: NA

KEGG:

id description
K19530 JPH; junctophilin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008280 True 1194 mRNA 0.59 2 49549906 49560080

Neighbor

gene id symbol gene type direction distance location
AMCG00008272 NA coding upstream 78291 49469289 ~ 49471615 (+)
AMCG00008262 stk35,LOC105016730,LOC106583621,LOC103372836,LOC104935842 coding upstream 609811 48923864 ~ 48940095 (+)
AMCG00008250 NA coding upstream 1075374 48462293 ~ 48474532 (+)
AMCG00008253 stau1 coding upstream 1173835 48347747 ~ 48376071 (+)
AMCG00008252 cse1l coding upstream 1223768 48292639 ~ 48326138 (+)
AMCG00008281 NA coding downstream 26987 49587067 ~ 49596793 (+)
AMCG00008283 NA coding downstream 319899 49879979 ~ 49881352 (+)
AMCG00008291 NA coding downstream 798907 50358987 ~ 50359865 (+)
AMCG00008292 NA coding downstream 806364 50366444 ~ 50403958 (+)
AMCG00008294 NA coding downstream 891230 50451310 ~ 50460054 (+)
G29853 NA non-coding upstream 5175 49544362 ~ 49544731 (+)
G29823 NA non-coding upstream 170532 49368645 ~ 49379374 (+)
G29813 NA non-coding upstream 201884 49344038 ~ 49348022 (+)
G29747 NA non-coding upstream 357690 49137516 ~ 49192216 (+)
G29748 NA non-coding upstream 402681 49139140 ~ 49147225 (+)
G29877 NA non-coding downstream 236364 49796444 ~ 49797983 (+)
G29883 tp53rk non-coding downstream 277925 49838005 ~ 49839324 (+)
G29973 NA non-coding downstream 493633 50053713 ~ 50053971 (+)
G29979 NA non-coding downstream 534958 50095038 ~ 50095273 (+)
G29986 NA non-coding downstream 565610 50125690 ~ 50126131 (+)
AMCG00008271 NA other upstream 131160 49404856 ~ 49418746 (+)
AMCG00008270 ttpal other upstream 254547 49288246 ~ 49295359 (+)
AMCG00008263 NA other upstream 378889 49163816 ~ 49171017 (+)
AMCG00008249 NA other upstream 1608152 47929667 ~ 47941754 (+)
AMCG00008241 LOC106596195,LOC106601018,LOC105896344,LOC105896343 other upstream 1631778 47913868 ~ 47918128 (+)
AMCG00008279 NA other downstream 279432 49839512 ~ 49858576 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other downstream 762633 50322713 ~ 50356404 (+)
G30166 NA other downstream 1866501 51426581 ~ 51428055 (+)
G30232 NA other downstream 2540682 52100762 ~ 52101524 (+)
G30299 NA other downstream 2818249 52378329 ~ 52378776 (+)

Expression


Co-expression Network