Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00008281 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030123.1 |
| NCBI id | CM030123.1 |
| chromosome length | 53548854 |
| location | 49587067 ~ 49596793 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0072350 | tricarboxylic acid metabolic process | biological_process |
| GO:0006099 | tricarboxylic acid cycle | biological_process |
| GO:0006101 | citrate metabolic process | biological_process |
| GO:0009060 | aerobic respiration | biological_process |
| GO:0015980 | energy derivation by oxidation of organic compounds | biological_process |
| GO:0045333 | cellular respiration | biological_process |
| id | description |
|---|---|
| ko00020 | Citrate cycle (TCA cycle) |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00008281 | True | 1179 | mRNA | 0.56 | 2 | 49587067 | 49596793 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00008280 | jph2,LOC107707015,LOC108275945 | coding | upstream | 26987 | 49549906 ~ 49560080 (+) |
| AMCG00008272 | NA | coding | upstream | 115452 | 49469289 ~ 49471615 (+) |
| AMCG00008262 | stk35,LOC105016730,LOC106583621,LOC103372836,LOC104935842 | coding | upstream | 646972 | 48923864 ~ 48940095 (+) |
| AMCG00008250 | NA | coding | upstream | 1112535 | 48462293 ~ 48474532 (+) |
| AMCG00008253 | stau1 | coding | upstream | 1210996 | 48347747 ~ 48376071 (+) |
| AMCG00008283 | NA | coding | downstream | 283186 | 49879979 ~ 49881352 (+) |
| AMCG00008291 | NA | coding | downstream | 762194 | 50358987 ~ 50359865 (+) |
| AMCG00008292 | NA | coding | downstream | 769651 | 50366444 ~ 50403958 (+) |
| AMCG00008294 | NA | coding | downstream | 854517 | 50451310 ~ 50460054 (+) |
| AMCG00008296 | NA | coding | downstream | 965961 | 50562754 ~ 50582183 (+) |
| G29853 | NA | non-coding | upstream | 42336 | 49544362 ~ 49544731 (+) |
| G29823 | NA | non-coding | upstream | 207693 | 49368645 ~ 49379374 (+) |
| G29813 | NA | non-coding | upstream | 239045 | 49344038 ~ 49348022 (+) |
| G29747 | NA | non-coding | upstream | 394851 | 49137516 ~ 49192216 (+) |
| G29877 | NA | non-coding | downstream | 199651 | 49796444 ~ 49797983 (+) |
| G29883 | tp53rk | non-coding | downstream | 241212 | 49838005 ~ 49839324 (+) |
| G29973 | NA | non-coding | downstream | 456920 | 50053713 ~ 50053971 (+) |
| G29979 | NA | non-coding | downstream | 498245 | 50095038 ~ 50095273 (+) |
| G29986 | NA | non-coding | downstream | 528897 | 50125690 ~ 50126131 (+) |
| AMCG00008271 | NA | other | upstream | 168321 | 49404856 ~ 49418746 (+) |
| AMCG00008270 | ttpal | other | upstream | 291708 | 49288246 ~ 49295359 (+) |
| AMCG00008263 | NA | other | upstream | 416050 | 49163816 ~ 49171017 (+) |
| AMCG00008249 | NA | other | upstream | 1645313 | 47929667 ~ 47941754 (+) |
| AMCG00008241 | LOC106596195,LOC106601018,LOC105896344,LOC105896343 | other | upstream | 1668939 | 47913868 ~ 47918128 (+) |
| AMCG00008279 | NA | other | downstream | 242719 | 49839512 ~ 49858576 (+) |
| AMCG00008288 | ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 | other | downstream | 725920 | 50322713 ~ 50356404 (+) |
| G30166 | NA | other | downstream | 1829788 | 51426581 ~ 51428055 (+) |
| G30232 | NA | other | downstream | 2503969 | 52100762 ~ 52101524 (+) |
| G30299 | NA | other | downstream | 2781536 | 52378329 ~ 52378776 (+) |
