AMCG00008282


Basic Information

Item Value
gene id AMCG00008282
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49947011 ~ 49987575 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008282
ACTGTGGGAGCTATCGTTGCATGCTCTGGCCCCCTCTAGGGCACCAGATTCAAGAGGGGGACTACAGCTTTTATACCACAGGACAAAGGAAGCAGGGGCAGAGGAGGGAAGTTCAGGGGATGGGGCCACTGGGGAGAGGTCAAGGGCAACAGAGGGTGGAGAAGGGGCGGCATAGGAGATACAAGGGGCAACAGGGAATGGACGAAGGGGAAAGGGTGTGGGCCGAGGGTCAGCACGTGGAGGGTCCAGGAAGCTGGGGCGGGCCCGGCCGCGATAGGGAGCAAGGCGTGGCTCTCAGTGTAGCCTTGGCGCTGCAGTGCTTGCTTTGCGAGAGACATCATTCTGTGCAGGCAGACTGCGATGACACAGTCAGTCTACCCTGCTCCGCTACCCAGAACACCAAGACCTACCGATCCATCACCTGGTACAGGTGGTACAAGATGAACAATCGGTCGGGAATTCTCAGGAAGAGGAAAGACATCATAATGCCTTTCAACTTCTCCCGGAAGGCCGAATTTGGACCAATGGAAGCCCTCATTCTGCCAAATGTGAGGCCTGAAGACTCTGGGAAATACCAGTGTTTCCTTTCAGCTGAACTTGGATCCCCTAACCAAGAATCAGAAATCACCATGACTGTGCAAGaGTGTGTAACCCAAATTgtctccaccaccatcacccTTCCTGTTGAGTGGACATCCAGTGGACCCTTGGTGGTGCAGAGGAACTCCAGTGTGCACTGCGGAACTCACATGACCGAAGTGTCTGCAGTTTTGCTGGTATCCGGCTTCACTGCCCTTGGCCTGGTTAAAGCAGTATTGTCGTTCTTCTTTGCAGCGGTGTATTTCAAGATTATAGAGTGGAGAAAAAGGAGATGTCAAAGACAGCTCTGGAGATAGAGTGTGGGACGTGAGAAGAGATCCTCAGCTCAGCCAGCTTGTGTTTGTGACCTGTACTGAGAACAAGTACAACAGGACTGTCAGACTCCTTAGAGGCACTACAGGAGATCACAACTTACTCATTACTCATATCTAAGTATTTTAGGggaatattttttctcttaagCACCACTGCAACCAcacaaatggggaaaaaaatcccgTTAATATGGTTGAAAAGTCACATAATCGTGGTAGTCAAGGCAATATCAGTATGCTGgcttgtaattttgtaattaagGAGATATGAGCAGCAGTTTACAAGACACAAAAAAGAGGGAACACAGGACCTTGGTCCAACAAGttatatataagtgtgtgtatgtgtgtgtatgtatatatctgtatCCTTTTCGAATGGGGTGGGAGGGTGTAggacattattttgtgtgttttattattcatttgcaaattgacaaaatatattcacataGTAGCCAGCATCCTGAGAATGTGAGGTCTTCAGAAAGTAATTGGGCTCAATTGAGGACTAATCATTTCTTTTACAGACCTAAAGCATTTATGTCTGGGTGTAGCACCTTACCAGGAGTCAgttgaaaaaacacaagcaaatgAAGAGCAAATAAACAGACTGAATTGTGTTTTGACAAACTCAGAATGTTTGATTGTACATCAATGACACACATTTGGCAAAACACAACATACAGGTGAGTACTCCTGTGTTTGGAGAACAATGGAAGTTAACTACAATGTCACCATATCCACCGCCATGCCACCCTTGGGCCACACTACCCATCTTCTTAATTTCCTGAACACACTATATAACCATATTTTTCAGCAAGAGCAGAGAAGGCCAGGGGATCCTGAGCAGCACATGTATGTTCTCATTTGGGGCAACATGAGCTTCCATCGGGCTGCTCAGGTCCACCACTGGTTCCTTGACCATCTCAGGTTTACACTTCTCTATCTCCCTCCCTATTCCCCATAGAGGACTTTTTGTCAGCATGGCAGTAGAAGGTGTACAATTGCAAACCCCATGGGTAAATGGCCTTTCTCCAGGCAATGGTGGAGGCCTGTGGAGACCTGTCAGCGGTTGATGTGCCTTGATAAACAACATTTCTCCCGCTGTCTGTCCAAGGAGAACATCACCTGTGATGTTGGTGAACATCTGTTGCTGGACCAGAATTTTGAAAGTTTCTTGATCTATAATCTACAATTTATCTAATAAATCTACAATTGATCTAACACAGTAATATGTCTGCATGTTTACAGTATGTTTTCTTACAACAtgctgtttgaaatgtatggaATCGTGG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008282 True 2212 mRNA 0.46 6 49947011 49987575

Neighbor

gene id symbol gene type direction distance location
AMCG00008278 NA coding downstream 106924 49838196 ~ 49840087 (-)
AMCG00008276 slc13a3,LOC106572485 coding downstream 171043 49773114 ~ 49775968 (-)
AMCG00008277 NA coding downstream 194383 49739055 ~ 49752628 (-)
AMCG00008275 NA coding downstream 235402 49709866 ~ 49711609 (-)
AMCG00008274 NA coding downstream 285261 49653570 ~ 49661750 (-)
AMCG00008284 LOC105895941,LOC108424612,LOC108255211,LOC103042686,LOC104930306,LOC103375199,LOC101473264 coding upstream 9385 49996960 ~ 50029620 (-)
AMCG00008285 tcf15,LOC106567197,LOC107669611,LOC107594541 coding upstream 99518 50087093 ~ 50089767 (-)
AMCG00008286 NA coding upstream 128458 50116033 ~ 50119306 (-)
AMCG00008287 scrt2,LOC103139108,LOC102228875 coding upstream 160242 50147817 ~ 50155865 (-)
AMCG00008290 slc52a3 coding upstream 304757 50292332 ~ 50293363 (-)
G29926 NA non-coding downstream 159119 49786331 ~ 49787892 (-)
G29904 NA non-coding downstream 325051 49592278 ~ 49621960 (-)
G29908 NA non-coding downstream 332591 49610123 ~ 49614420 (-)
G29899 NA non-coding downstream 358206 49515484 ~ 49588805 (-)
G29834 NA non-coding downstream 529797 49411356 ~ 49417214 (-)
G29987 NA non-coding upstream 138065 50125640 ~ 50126131 (-)
G30003 NA non-coding upstream 197457 50185032 ~ 50185277 (-)
G30049 NA non-coding upstream 264135 50251710 ~ 50251922 (-)
G30051 NA non-coding upstream 273181 50260756 ~ 50261187 (-)
G30053 NA non-coding upstream 279501 50267076 ~ 50267435 (-)
G29928 NA other downstream 41922 49795971 ~ 49905089 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other downstream 409730 49497400 ~ 49537281 (-)
AMCG00008264 NA other downstream 693767 49175725 ~ 49253244 (-)
AMCG00008255 NA other downstream 1528078 48411085 ~ 48418933 (-)
AMCG00008256 arfgef2 other downstream 1655568 48202621 ~ 48291443 (-)
G29974 LOC101154678 other upstream 66250 50053825 ~ 50054102 (-)
G30054 NA other upstream 286163 50273738 ~ 50274183 (-)
AMCG00008298 NA other upstream 536412 50523987 ~ 50528036 (-)
AMCG00008318 NA other upstream 2341661 52329236 ~ 52339097 (-)
AMCG00008325 znf341,LOC106566899 other upstream 2393481 52381056 ~ 52384567 (-)

Expression


Co-expression Network