AMCG00008284 (LOC105895941,LOC108424612,LOC108255211,LOC103042686,LOC104930306,LOC103375199,LOC101473264)



Basic Information


Item Value
gene id AMCG00008284
gene name LOC105895941,LOC108424612,LOC108255211,LOC103042686,LOC104930306,LOC103375199,LOC101473264
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 49996960 ~ 50029620 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00008284
GTACAGAAGAGCCGATTGCCGCTCACccacctgcccccccccccccccccccccccccccccccccctcagccaggccctgcccctgcccctcccCCTGGCGTGTCACTGTccCCGGATCTGCCCCGTGCCCCACCATTCAGTCAAGCTGTCGGACATGTCGGGACCTGTACCGAGCCGGGCTCGAGTGTACACAGATGTGAACACGCATCGGCCACGAGAGTACTGGGATTACGAaaatcAAGACGACTACCAGCTAGTTCGAAAATTAGGTCGAGGCAAATACAGTGAAGTCTTTGAAGCAatcaacattacaaataatgaaaaagtagTTGTGAAAATACTTAAGccagtgaagaagaagaagattaaACGGGAGATAAAGATTCTGGAGAACCTGCGCGGGGGACCCAATATAATCACTCTGTTAGACATTGTCAAAGACCCAGTGTCAAGGACGCCTGCTCTGGTTTTTGAACATGTTAACAACACAGACTTCaagCAATTGTATCAGACCTTAACAGACTACGATATAAGATTCTACATGTACGAGATCTTAAAGGCACTGGACTACTGTCACAGCATGGGAATTATGCACAGAGACGTCAAACCACACAACGTGATGATTGATCACGAGCACAGGAAGCTGCGACTCATTGACTGGGGCCTGGCTGAGTTCTACCACCCTGGTCAGGAATACAATGTGAGGGTGGCTTCTCGCTACTTCAAAGGACCTGAGTTACTTGTAGACTACCAGATGTATGACTACAGTCTGGACATGTGGAGTTTGGGGTGTATGTTGGCAAGCATGATCTTCAGAAAGGAGCCATTCTTCCATGGGCATGATAACTATGACCAGTTGGTGAGAATAGCCAAAGTCCTGGGCACTGAAGACCTCTACGACTACATCGACAAGTATAATATTGAACTGGAACCTCGATTTAATGACATCTTAGGGAGTGAGAACCAGCACCTCGTCAGCCCCGAAGCCTTGGATTTCTTGGACAAACTGCTGCGATATGATCACCAGGCACGGCTCACCGCTCGCGAGGCAATGGAGCATCCCTATTTCTATCCGATTGTAAAAGACCAGTCTCGAATGGGAGGATCAGCCAATATGCCAAGTGCAAACACACCTGTGAGCACGCCCAACATGATGTCAGGGATTTCTGCCATGCCAACCTCCTCTCCCCTTGGGCCCCTGGCTGGGTCTCCAGTCATCTCTGCCGCCAACACCCTGGGCACCCCAGTGCCAGCGGCAGCCGGCGCCCAGCAG

Function


NR:

description
PREDICTED: casein kinase II subunit alpha

GO: NA

KEGG:

id description
K03097 CSNK2A; casein kinase II subunit alpha

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00008284 True 1275 mRNA 0.52 13 49996960 50029620

Neighbor


gene id symbol gene type direction distance location
AMCG00008282 NA coding downstream 9385 49947011 ~ 49987575 (-)
AMCG00008278 NA coding downstream 156873 49838196 ~ 49840087 (-)
AMCG00008276 slc13a3,LOC106572485 coding downstream 220992 49773114 ~ 49775968 (-)
AMCG00008277 NA coding downstream 244332 49739055 ~ 49752628 (-)
AMCG00008275 NA coding downstream 285351 49709866 ~ 49711609 (-)
AMCG00008285 tcf15,LOC106567197,LOC107669611,LOC107594541 coding upstream 57473 50087093 ~ 50089767 (-)
AMCG00008286 NA coding upstream 86413 50116033 ~ 50119306 (-)
AMCG00008287 scrt2,LOC103139108,LOC102228875 coding upstream 118197 50147817 ~ 50155865 (-)
AMCG00008290 slc52a3 coding upstream 262712 50292332 ~ 50293363 (-)
AMCG00008289 LOC105022328,LOC106572481,LOC107572061,LOC107683645,LOC108425074,LOC103044311 coding upstream 279158 50308778 ~ 50313435 (-)
G29957 NA non-coding downstream 22314 49974426 ~ 49974646 (-)
G29926 NA non-coding downstream 209068 49786331 ~ 49787892 (-)
G29904 NA non-coding downstream 375000 49592278 ~ 49621960 (-)
G29908 NA non-coding downstream 382540 49610123 ~ 49614420 (-)
G29899 NA non-coding downstream 408155 49515484 ~ 49588805 (-)
G29987 NA non-coding upstream 96020 50125640 ~ 50126131 (-)
G30003 NA non-coding upstream 155412 50185032 ~ 50185277 (-)
G30049 NA non-coding upstream 222090 50251710 ~ 50251922 (-)
G30051 NA non-coding upstream 231136 50260756 ~ 50261187 (-)
G30053 NA non-coding upstream 237456 50267076 ~ 50267435 (-)
G29928 NA other downstream 91871 49795971 ~ 49905089 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other downstream 459679 49497400 ~ 49537281 (-)
AMCG00008264 NA other downstream 743716 49175725 ~ 49253244 (-)
AMCG00008255 NA other downstream 1578027 48411085 ~ 48418933 (-)
AMCG00008256 arfgef2 other downstream 1705517 48202621 ~ 48291443 (-)
G29974 LOC101154678 other upstream 24205 50053825 ~ 50054102 (-)
G30054 NA other upstream 244118 50273738 ~ 50274183 (-)
AMCG00008298 NA other upstream 494367 50523987 ~ 50528036 (-)
AMCG00008318 NA other upstream 2299616 52329236 ~ 52339097 (-)
AMCG00008325 znf341,LOC106566899 other upstream 2351436 52381056 ~ 52384567 (-)

Expression



Co-expression Network