AMCG00008284 (LOC105895941,LOC108424612,LOC108255211,LOC103042686,LOC104930306,LOC103375199,LOC101473264)
Chromosome Information
Item |
Value |
chromosome id |
CM030123.1 |
NCBI id |
CM030123.1
|
chromosome length |
53548854 |
location |
49996960 ~ 50029620 (-) |
genome version |
AmiCal1_2021_bowfin_Genome |
Sequence
>AMCG00008284
GTACAGAAGAGCCGATTGCCGCTCACccacctgcccccccccccccccccccccccccccccccccctcagccaggccctgcccctgcccctcccCCTGGCGTGTCACTGTccCCGGATCTGCCCCGTGCCCCACCATTCAGTCAAGCTGTCGGACATGTCGGGACCTGTACCGAGCCGGGCTCGAGTGTACACAGATGTGAACACGCATCGGCCACGAGAGTACTGGGATTACGAaaatcAAGACGACTACCAGCTAGTTCGAAAATTAGGTCGAGGCAAATACAGTGAAGTCTTTGAAGCAatcaacattacaaataatgaaaaagtagTTGTGAAAATACTTAAGccagtgaagaagaagaagattaaACGGGAGATAAAGATTCTGGAGAACCTGCGCGGGGGACCCAATATAATCACTCTGTTAGACATTGTCAAAGACCCAGTGTCAAGGACGCCTGCTCTGGTTTTTGAACATGTTAACAACACAGACTTCaagCAATTGTATCAGACCTTAACAGACTACGATATAAGATTCTACATGTACGAGATCTTAAAGGCACTGGACTACTGTCACAGCATGGGAATTATGCACAGAGACGTCAAACCACACAACGTGATGATTGATCACGAGCACAGGAAGCTGCGACTCATTGACTGGGGCCTGGCTGAGTTCTACCACCCTGGTCAGGAATACAATGTGAGGGTGGCTTCTCGCTACTTCAAAGGACCTGAGTTACTTGTAGACTACCAGATGTATGACTACAGTCTGGACATGTGGAGTTTGGGGTGTATGTTGGCAAGCATGATCTTCAGAAAGGAGCCATTCTTCCATGGGCATGATAACTATGACCAGTTGGTGAGAATAGCCAAAGTCCTGGGCACTGAAGACCTCTACGACTACATCGACAAGTATAATATTGAACTGGAACCTCGATTTAATGACATCTTAGGGAGTGAGAACCAGCACCTCGTCAGCCCCGAAGCCTTGGATTTCTTGGACAAACTGCTGCGATATGATCACCAGGCACGGCTCACCGCTCGCGAGGCAATGGAGCATCCCTATTTCTATCCGATTGTAAAAGACCAGTCTCGAATGGGAGGATCAGCCAATATGCCAAGTGCAAACACACCTGTGAGCACGCCCAACATGATGTCAGGGATTTCTGCCATGCCAACCTCCTCTCCCCTTGGGCCCCTGGCTGGGTCTCCAGTCATCTCTGCCGCCAACACCCTGGGCACCCCAGTGCCAGCGGCAGCCGGCGCCCAGCAG
Function
NR:
description |
PREDICTED: casein kinase II subunit alpha |
GO: NA
KEGG:
id |
description |
K03097
|
CSNK2A; casein kinase II subunit alpha |
RNA
RNA id |
representative |
length |
rna type |
GC content |
exon number |
start site |
end site |
AMCG00008284 |
True |
1275 |
mRNA |
0.52 |
13 |
49996960 |
50029620 |
Neighbor
gene id |
symbol |
gene type |
direction |
distance |
location |
AMCG00008282 |
NA
|
coding |
downstream |
9385 |
49947011 ~ 49987575 (-) |
AMCG00008278 |
NA
|
coding |
downstream |
156873 |
49838196 ~ 49840087 (-) |
AMCG00008276 |
slc13a3,LOC106572485
|
coding |
downstream |
220992 |
49773114 ~ 49775968 (-) |
AMCG00008277 |
NA
|
coding |
downstream |
244332 |
49739055 ~ 49752628 (-) |
AMCG00008275 |
NA
|
coding |
downstream |
285351 |
49709866 ~ 49711609 (-) |
AMCG00008285 |
tcf15,LOC106567197,LOC107669611,LOC107594541
|
coding |
upstream |
57473 |
50087093 ~ 50089767 (-) |
AMCG00008286 |
NA
|
coding |
upstream |
86413 |
50116033 ~ 50119306 (-) |
AMCG00008287 |
scrt2,LOC103139108,LOC102228875
|
coding |
upstream |
118197 |
50147817 ~ 50155865 (-) |
AMCG00008290 |
slc52a3
|
coding |
upstream |
262712 |
50292332 ~ 50293363 (-) |
AMCG00008289 |
LOC105022328,LOC106572481,LOC107572061,LOC107683645,LOC108425074,LOC103044311
|
coding |
upstream |
279158 |
50308778 ~ 50313435 (-) |
G29957 |
NA
|
non-coding |
downstream |
22314 |
49974426 ~ 49974646 (-) |
G29926 |
NA
|
non-coding |
downstream |
209068 |
49786331 ~ 49787892 (-) |
G29904 |
NA
|
non-coding |
downstream |
375000 |
49592278 ~ 49621960 (-) |
G29908 |
NA
|
non-coding |
downstream |
382540 |
49610123 ~ 49614420 (-) |
G29899 |
NA
|
non-coding |
downstream |
408155 |
49515484 ~ 49588805 (-) |
G29987 |
NA
|
non-coding |
upstream |
96020 |
50125640 ~ 50126131 (-) |
G30003 |
NA
|
non-coding |
upstream |
155412 |
50185032 ~ 50185277 (-) |
G30049 |
NA
|
non-coding |
upstream |
222090 |
50251710 ~ 50251922 (-) |
G30051 |
NA
|
non-coding |
upstream |
231136 |
50260756 ~ 50261187 (-) |
G30053 |
NA
|
non-coding |
upstream |
237456 |
50267076 ~ 50267435 (-) |
G29928 |
NA
|
other |
downstream |
91871 |
49795971 ~ 49905089 (-) |
AMCG00008273 |
gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014
|
other |
downstream |
459679 |
49497400 ~ 49537281 (-) |
AMCG00008264 |
NA
|
other |
downstream |
743716 |
49175725 ~ 49253244 (-) |
AMCG00008255 |
NA
|
other |
downstream |
1578027 |
48411085 ~ 48418933 (-) |
AMCG00008256 |
arfgef2
|
other |
downstream |
1705517 |
48202621 ~ 48291443 (-) |
G29974 |
LOC101154678
|
other |
upstream |
24205 |
50053825 ~ 50054102 (-) |
G30054 |
NA
|
other |
upstream |
244118 |
50273738 ~ 50274183 (-) |
AMCG00008298 |
NA
|
other |
upstream |
494367 |
50523987 ~ 50528036 (-) |
AMCG00008318 |
NA
|
other |
upstream |
2299616 |
52329236 ~ 52339097 (-) |
AMCG00008325 |
znf341,LOC106566899
|
other |
upstream |
2351436 |
52381056 ~ 52384567 (-) |
Expression