AMCG00008286


Basic Information

Item Value
gene id AMCG00008286
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50116033 ~ 50119306 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008286
AATGCTTCCTTGTTTACAAGCCGGGTGTGTGTCTAGTTTACAGGCAATATGTCGATGGCTGTCAGGGTAAGAAACAGTGCAACTGAATTTAGCAAACGATTTTTCGCCAACAGAAGAATAATTATCGATAAGCCGGCGAAGATGTATAATTGCAAAAATGAAGATATGTCGATACACACGGATATCATTGCAGTGGTCCACGATGTGCCAATGAAAATTATTATCCGACCCATTCCTCCAGAGTTGAATGAACTGAAAGTACAGAGCTTAATGGACTCTATAAAGCAGCCTGCTAAAGTGTCCAGTGTCCCTCCTATTGACGTCCTGTGGATCAAGGGCCAGAGAGGAGGGGACTACTACTATTCATTTGGAGGATGCCACAGGTTTGCAGCATATCAGAGGTTAAACATGGAGACAATCCCAGCAAAAATTGTCAAGTCAACGGTTTCTGATCTACGCACTTACTTGGGTGCCTCAACTCCTGACTTGCAGTGAAAGAAACCAGTTAAAATCTAGAAGATGCTTTTAGTTACTTGAAACTGTGATTGAAGTCGTAGTTAATTTCACATGCATTTTCATATACTCTTAAGAGCTTGCAGAACTTTTCACTGATGGTAAATGTATTCTCCTGTTTGTAAAACTTTGCAGTATTgagcaccaattcttaatgcaTTAGTGtgtgaatcccacaggaataacatctGCATGCCCCATGCACTTTCACTGAGTTCTGAAGTGGTCACATCTACCCTGAATCTGACCCTAAACTTGTAATACATCTGATTAACAGCAGAATTCAGATAAAGTGCATAAGGTATTCATCTGTTATTCATGTGGTATTCATAACTCAAtccattaagaattggtgcccattattataaaatgtgacCCTTATATTCTGGTATTAATACGAAGTTAAGATGCCATCTAGTGcaacatattatataataaattccATACTAATTTCAGTCAACTGAGTGCTTCATATGCTTGGTAGAGGACCAGTATGTAGTGAATATTACTTGCTTTTAAAGTAGCCACACAAAGTCTTATGAATTGTGAGATGTCAATGTGATATGCTGTGCACAGACCTTCTGTACCTCAGACCAAGAACCTGAAACTGTAATTGACTGTACCACACAATTtcccaagaaatgaaaacacactgtCAAAAAACACACGTCATTAGCAGCAAGCAGCTATGGGTAAACCCCCTACGATTTATGGGCCTTGTACAGTACTTCTAAAAGGATCAAAGCTGTGAAAGAAAACCCTTTTGCCGTCTGGAAacagtacatatttatttgaatgacaGCCATGTACTCTGTGTGCTAATGGACTGGTGTAATAGCAAAGAAGCATCGAGTGGAAACAGCTGCGCATAACAGGAAAGACCTAACAAAAGAGGCCTGGAACTTTGCTGATTGAGGTCACAATCACACCATACTAGCCACCCGCTGCTTCTGCTACTGAACACGTCAGCTTCTATATTTGTTACAGCTCTTTATTCTAGGAAGACCTGTAGTATTGTTTGCTACTGAAGGACTTGAGGATCCCGTGCAGGCCTATGTTTAGACTATTCAGGTAGTGCTTTTTGACTTGGGCCTGCATTCAAAAGCTGAGGTGCAGACAATTTCCAAAACTCAGTCCCtcgtttttttgtgttttaatttgtttatttttttgtgttgtggttttctttGGTGTTacggggtggggtggggaaaCATTAAAGATGTCCAGCATGTGATTGGTAAGTGAACATAATTGTGGCTTTTCTGGCCAAGGAAATGCAGTTGaggaattaaaaatgtatttcagttctGATTTATATCATTTTCTGAAGCATTCAGGAGTTTTCCTTGGCACAAGGGAGTACTGGATATTTTCTAAGAAAGTGATACTGTAAGTGAGAAATGGTGTGATGGAACATTATTGTATGGGGATGACTTGTTACGGTCTGTGTagagttttgtatttttaaatagtttgtatggataaatatgaatacagctTGTAAAACATATGGGTTTAGAAATGGACATTATAATTATGGGTATTTTCAAGCTACTGCACTGCATTGACATTTCTACAGGCTTGAAGATAGCCCACCTTTGGTGATTATACAGAGACTTAGTTGATACAGAGGAACCTCTGGCCAGCAGGTGGAAGCACTGTCCTGTTTTTCTTGGAATAATCAAGACAGCTGAGGAATCCTCATTTGCCTCCCTTTGCAGAGCTGCAAAACTTGTGATTTTCAGACTTAATATGTATGATTGAATAACTTTTTCAAACCTATTTTCTGAAGATTTGTAAGAACATAGTGAATATTGAATATGAGGTAGAatgtctgcattttttaaaatctcaaaatgctttattttttaaaatctgaatgcaAAAATGGTAGGTGGGAGcctatttattaaaatactgtaacatCATATTATTgtcttgtatttaaataaatgttatatctGTTAATCTTTGTATTGATTCATTATGAATTTCGTCTTCACAAGTCCTGCACCAATCATAGCTGTTCACATGAAATCATTATTTAGGT

Function

GO: NA

KEGG:

id description
K12260 SRX1; sulfiredoxin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008286 True 2566 mRNA 0.38 2 50116033 50119306

Neighbor

gene id symbol gene type direction distance location
AMCG00008285 tcf15,LOC106567197,LOC107669611,LOC107594541 coding downstream 26266 50087093 ~ 50089767 (-)
AMCG00008284 LOC105895941,LOC108424612,LOC108255211,LOC103042686,LOC104930306,LOC103375199,LOC101473264 coding downstream 86413 49996960 ~ 50029620 (-)
AMCG00008282 NA coding downstream 128458 49947011 ~ 49987575 (-)
AMCG00008278 NA coding downstream 275946 49838196 ~ 49840087 (-)
AMCG00008276 slc13a3,LOC106572485 coding downstream 340065 49773114 ~ 49775968 (-)
AMCG00008287 scrt2,LOC103139108,LOC102228875 coding upstream 28511 50147817 ~ 50155865 (-)
AMCG00008290 slc52a3 coding upstream 173026 50292332 ~ 50293363 (-)
AMCG00008289 LOC105022328,LOC106572481,LOC107572061,LOC107683645,LOC108425074,LOC103044311 coding upstream 189472 50308778 ~ 50313435 (-)
AMCG00008293 ptpn1,LOC107669644,LOC107751444,LOC107556311,LOC106522952 coding upstream 278433 50397739 ~ 50406216 (-)
AMCG00008295 LOC107738191,LOC107754892,LOC107590469,LOC107558752,LOC106567112 coding upstream 331781 50451087 ~ 50518539 (-)
G29957 NA non-coding downstream 141387 49974426 ~ 49974646 (-)
G29926 NA non-coding downstream 328141 49786331 ~ 49787892 (-)
G29904 NA non-coding downstream 494073 49592278 ~ 49621960 (-)
G29908 NA non-coding downstream 501613 49610123 ~ 49614420 (-)
G29899 NA non-coding downstream 527228 49515484 ~ 49588805 (-)
G29987 NA non-coding upstream 6334 50125640 ~ 50126131 (-)
G30003 NA non-coding upstream 65726 50185032 ~ 50185277 (-)
G30049 NA non-coding upstream 132404 50251710 ~ 50251922 (-)
G30051 NA non-coding upstream 141450 50260756 ~ 50261187 (-)
G30053 NA non-coding upstream 147770 50267076 ~ 50267435 (-)
G29974 LOC101154678 other downstream 61931 50053825 ~ 50054102 (-)
G29928 NA other downstream 210944 49795971 ~ 49905089 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other downstream 578752 49497400 ~ 49537281 (-)
AMCG00008264 NA other downstream 862789 49175725 ~ 49253244 (-)
AMCG00008255 NA other downstream 1697100 48411085 ~ 48418933 (-)
G30054 NA other upstream 154432 50273738 ~ 50274183 (-)
AMCG00008298 NA other upstream 404681 50523987 ~ 50528036 (-)
AMCG00008318 NA other upstream 2209930 52329236 ~ 52339097 (-)
AMCG00008325 znf341,LOC106566899 other upstream 2261750 52381056 ~ 52384567 (-)

Expression


Co-expression Network