AMCG00008287 (scrt2,LOC103139108,LOC102228875)


Basic Information

Item Value
gene id AMCG00008287
gene name scrt2,LOC103139108,LOC102228875
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50147817 ~ 50155865 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008287
ATGCCCCGTTCATTTTTGgtgaagaaaataaagcttGATGATTTCTCATCCTCTGCTGTGAGCAATACTAACCAACACCATCACCACCATCTAGATGACAGTTACACTTTTGCACGCTCGATCACAGACTCCGTGGCAAGCTTGGGTGTCCGAATCAGTGAAAATGGCTACATCCAGGACTACATCACGCCGTCAGTGTACAAGAGTGAGAAGAAGATGGGCCTCAAGCTGGCATCGGCCGTGTCGGAGCCCCTGTACACCCAGGTGAGCAGCGGGGGGGAGGAGTACTCCGACCACGACATGGAGCACCCTGATAGCCCCCAGTCAGGCATGACGGCCAGCGGCTTCTTCAGTGGGGAGGCGGAGGCCCTGACGGAGGGCTACACCATGGATGCCTTCTTCATCTCGGATGGGCGCTCACGGAGAAaggtggagggagaggggcaaTCAGGGCCAGGCGGCGGCGGCGGAGGAGCAGGAGGGGGCAGCTGTGGCAGTGCAGGGAGTGGTGGCGCTGTAATAGGTGGTAGCAGCGGCCAACCCCGGCACACTTGCAATGAGTGCGGGAAGACTTACGCCACCTCGTCCAACCTCAGCCGGCACAAGCAGACCCACCGCAGCCTGGACAGCAAGATGGCGCGCAAGTGCCCCACCTGCGACAAGGTGTACGTGTCCATGCCCGCCCTGGCAATGCACATCCTCACCCACGATCTCAAGCACAAGTGCGACGTATGTGGCAAGGCCTTCAGTCGGCCCTGGCTGTTGCAGGGCCACATGCGCTCGCACACTGGGGAGAAGCCTTTTGCCTGTGCCCACTGCGGGAAAGCTTTCGCTGACCGCTCCAACCTGCGCGCCCACATGCAAACCCACTCTGCCTTCAAGCACTACAAATGCAAGCGATGCAATAAAACCTTCGCCCTCAAGTCCTACCTGAACAAGCACTATGAGTCAGCTTGCTTCAAAGGTTCCCAGGAAGACGACTCATGCTCGGAGAACTAA

Function

symbol description
scrt2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within regulation of DNA damage response, signal transduction by p53 class mediator; regulation of neural precursor cell proliferation; and regulation of neuron apoptotic process. Is expressed in nervous system; spinal cord neural keel; spinal cord neural tube; and trigeminal placode. Orthologous to human SCRT2 (scratch family transcriptional repressor 2).

NR:

description
transcriptional repressor scratch 1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09219 SCRT; scratch

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008287 True 999 mRNA 0.58 2 50147817 50155865

Neighbor

gene id symbol gene type direction distance location
AMCG00008286 NA coding downstream 28511 50116033 ~ 50119306 (-)
AMCG00008285 tcf15,LOC106567197,LOC107669611,LOC107594541 coding downstream 58050 50087093 ~ 50089767 (-)
AMCG00008284 LOC105895941,LOC108424612,LOC108255211,LOC103042686,LOC104930306,LOC103375199,LOC101473264 coding downstream 118197 49996960 ~ 50029620 (-)
AMCG00008282 NA coding downstream 160242 49947011 ~ 49987575 (-)
AMCG00008278 NA coding downstream 307730 49838196 ~ 49840087 (-)
AMCG00008290 slc52a3 coding upstream 136467 50292332 ~ 50293363 (-)
AMCG00008289 LOC105022328,LOC106572481,LOC107572061,LOC107683645,LOC108425074,LOC103044311 coding upstream 152913 50308778 ~ 50313435 (-)
AMCG00008293 ptpn1,LOC107669644,LOC107751444,LOC107556311,LOC106522952 coding upstream 241874 50397739 ~ 50406216 (-)
AMCG00008295 LOC107738191,LOC107754892,LOC107590469,LOC107558752,LOC106567112 coding upstream 295222 50451087 ~ 50518539 (-)
AMCG00008297 kcng1,LOC102780788,LOC107711602,LOC107558732 coding upstream 394200 50550065 ~ 50559321 (-)
G29987 NA non-coding downstream 21686 50125640 ~ 50126131 (-)
G29957 NA non-coding downstream 173171 49974426 ~ 49974646 (-)
G29926 NA non-coding downstream 359925 49786331 ~ 49787892 (-)
G29904 NA non-coding downstream 525857 49592278 ~ 49621960 (-)
G29908 NA non-coding downstream 533397 49610123 ~ 49614420 (-)
G30003 NA non-coding upstream 29167 50185032 ~ 50185277 (-)
G30049 NA non-coding upstream 95845 50251710 ~ 50251922 (-)
G30051 NA non-coding upstream 104891 50260756 ~ 50261187 (-)
G30053 NA non-coding upstream 111211 50267076 ~ 50267435 (-)
G30058 NA non-coding upstream 158307 50314172 ~ 50314425 (-)
G29974 LOC101154678 other downstream 93715 50053825 ~ 50054102 (-)
G29928 NA other downstream 242728 49795971 ~ 49905089 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other downstream 610536 49497400 ~ 49537281 (-)
AMCG00008264 NA other downstream 894573 49175725 ~ 49253244 (-)
AMCG00008255 NA other downstream 1728884 48411085 ~ 48418933 (-)
G30054 NA other upstream 117873 50273738 ~ 50274183 (-)
AMCG00008298 NA other upstream 368122 50523987 ~ 50528036 (-)
AMCG00008318 NA other upstream 2173371 52329236 ~ 52339097 (-)
AMCG00008325 znf341,LOC106566899 other upstream 2225191 52381056 ~ 52384567 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC118966081 LOC106572483 misc NC_048573.1 CM023227.2 59432552 ~ 59454098 (-)