AMCG00008288 (ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722)


Basic Information

Item Value
gene id AMCG00008288
gene name ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50322713 ~ 50356404 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008288
ATGAGCAATCAGGCATTCATCCGGCCTTTCCGGGAGCACCACATCGACCCCACTGCCATCACGCGCCATGACTTCATCGAGACCAACGGTGACAACTGCATGCTGACTCTGGTCCCCCTGGCCAACATGGCCTATAAATTCATGACCCTCTCTCCAGcGGAGCTCTACTACAGCTACCCCTGGGACTGCTATGTGTTCTCCCTGGCCATTTTTGTCACACTCACCAACCAGATCCATAAGTGGTCCCACACCTACTTTGGCCTGCCGCGCTGGGTCACCCTCCTGCAGGACTGCCACATCATCCTGCCCCGAAAACACCACCGCGTCCACCATGTCTCCCCTCATGAGACCTACTTCTGCATAACCACAGGAAAGCGCTGTCAAGAATGGGTCAGTGTCATCATCTGCTTCTCTCTTATGGCCCTCAACTTCTGCCACCTCCTCGCCAACTTCCACCTGAGCCATATCTCCTACATCCTGCTGGGAATAGGTGCTAACTCCCATCCTTGTGGACTCTGTAGATCACTAGTTGCAGGAATTCTGACGGCAGACTTTGCTTCCGGCCTAGTACACTGGGGAGCAGACACCTGGGGTTCTGTGGATGTGCCCATTTTTGGAAAGGATGCAAATGCAAGCGTCCGAGGTGGGTGTGACGCCTACCAAACAGCCTGCGATCGATACCTCACCTGGAGAATAAAGCTCCGCGAGCTCCCGGGCACCTGGATGTTGCGGGCCCCATCGAGGCTCCCCACTGCCCGGCCCCCTATGTTCGGGGTCGCCTTGGGTTCCTTGTCTGTGAACCTCGACTCCGTTCTCTGCTCTCGCCATGTTCCACTGCAGGTCCAACCCCCCACCCGGCAAGCGAACCAACAGGGGCGCCGACATCACGGCCTGACCACGCCTCGTATCTACGATCAGCCACTCCTGACTGGTCAGCTCAACCCTTCCAGCCTATCCACTCCCAGCACCCTATTCCGCTCAGCCAATCGGTGA
>TU37559
CCCGTAACAGCATCAAGTAACCAATTGGCCTGGTTAAACTGCAAAATGGTTGTTATTCTTGCAAGGGGTAGCTTCAAAAGAGCGTCCATGGTACTCCTTCAAGACACTCATGAGAAAAtaaccctccctccctccttctccctctctcttgctctctctctatccaGGAAAGCGCTGTCAAGAATGGGTCAGTGTCATCATCTGCTTCTCTCTTATGGCCCTCAACTTCTGCCACCTCCTCGCCAACTTCCACCTGAGCCATATCTCCTACATCCTGCTGGGAATAGTTGCAGGAATTCTGACGGCAGACTTTGCTTCCGGCCTAGTACACTGGGGAGCAGACACCTGGGGTTCTGTGGATGTGCCCATTTTTGGAAAGGTAAAATGTCATGTATGGACTGTGATGCCATGTTGCATAAGACACGATAGACAGTTCTGTCCTGAAACGTGTGTTCTTCTGAAATCAGCTGTATTGTTTAAAGCAGGGAAAACAGGCCTACAGTGTAGTATTTGCttaacatcaacaaaaaaacatattca

Function

symbol description
ube2v1 Acts upstream of or within protein K63-linked ubiquitination. Part of UBC13-UEV1A complex. Orthologous to human UBE2V1 (ubiquitin conjugating enzyme E2 V1).

NR:

description
PREDICTED: transmembrane protein 189-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008288 True 993 mRNA 0.57 6 50322713 50356404
TU37559 False 540 TUCP 0.46 2 50351527 50352794

Neighbor

gene id symbol gene type direction distance location
AMCG00008283 NA coding upstream 441361 49879979 ~ 49881352 (+)
AMCG00008281 NA coding upstream 725920 49587067 ~ 49596793 (+)
AMCG00008280 jph2,LOC107707015,LOC108275945 coding upstream 762633 49549906 ~ 49560080 (+)
AMCG00008272 NA coding upstream 851098 49469289 ~ 49471615 (+)
AMCG00008262 stk35,LOC105016730,LOC106583621,LOC103372836,LOC104935842 coding upstream 1382618 48923864 ~ 48940095 (+)
AMCG00008291 NA coding downstream 2583 50358987 ~ 50359865 (+)
AMCG00008292 NA coding downstream 10040 50366444 ~ 50403958 (+)
AMCG00008294 NA coding downstream 94906 50451310 ~ 50460054 (+)
AMCG00008296 NA coding downstream 206350 50562754 ~ 50582183 (+)
AMCG00008304 NA coding downstream 976899 51333303 ~ 51336685 (+)
G30010 ub2v1,LOC105022328,LOC107557526,LOC106572481,LOC108425074 non-coding upstream 11504 50308100 ~ 50311209 (+)
G30017 NA non-coding upstream 48530 50273735 ~ 50274183 (+)
G30016 NA non-coding upstream 55263 50267223 ~ 50267450 (+)
G29991 NA non-coding upstream 166451 50155704 ~ 50156262 (+)
G29990 scrt2,LOC106572483,LOC103139108 non-coding upstream 173990 50147649 ~ 50148723 (+)
G30012 NA non-coding downstream 89453 50445857 ~ 50448965 (+)
G30073 NA non-coding downstream 172129 50528533 ~ 50530747 (+)
G30078 NA non-coding downstream 179370 50535774 ~ 50535987 (+)
G30083 NA non-coding downstream 198980 50555384 ~ 50555589 (+)
G30099 NA non-coding downstream 393976 50750380 ~ 50752307 (+)
AMCG00008279 NA other upstream 464137 49839512 ~ 49858576 (+)
AMCG00008271 NA other upstream 903967 49404856 ~ 49418746 (+)
AMCG00008270 ttpal other upstream 1027354 49288246 ~ 49295359 (+)
AMCG00008263 NA other upstream 1151696 49163816 ~ 49171017 (+)
AMCG00008249 NA other upstream 2380959 47929667 ~ 47941754 (+)
G30166 NA other downstream 1070177 51426581 ~ 51428055 (+)
G30232 NA other downstream 1744358 52100762 ~ 52101524 (+)
G30299 NA other downstream 2021925 52378329 ~ 52378776 (+)
G30300 NA other downstream 2024937 52381341 ~ 52382418 (+)
AMCG00008334 prex1 other downstream 2634881 52991285 ~ 53087480 (+)

Expression


Co-expression Network