AMCG00008289 (LOC105022328,LOC106572481,LOC107572061,LOC107683645,LOC108425074,LOC103044311)


Basic Information

Item Value
gene id AMCG00008289
gene name LOC105022328,LOC106572481,LOC107572061,LOC107683645,LOC108425074,LOC103044311
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50308778 ~ 50313435 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008289
AGACTGTGCGCGTCCACGCGGTGCTAGCACGTGCCTTACGTGCCCGCGCCCGAAACCTTGAGCGTGGGCGCGGACTCGAACGTTCCCACCGCTCTCGCGCCGACGCATGGCATCGTGCGCGTTCCCGCTAGGCAGCGACAAGATGGCAGCTGCCGCCGGATCGGGCGTGAAGGTACCTCGTAACTTCCGGCTGCTGGAGGAGCTAGAGGAGGGGCAGAAGGGCGTGGGAGATGGGACGGTGAGCTGGGGTTTGGAGGATGATGAGGACATGACCCTCACTCGCTGGAGAGGGATGATCATCGGACCGCCAAGGACAATCTACGAGAACAGGATGTACAGCCTGAAAGTGGAATGTGGGCCCAGATACCCAGAGACACCTCCCTTTGTCAGATTTGTGACCAAGATCAACTTGAATGGCGTGCACAACTCCAACGGTGTGGTGGATACCCGGGCAGTTTCGGCTCTGGCAAAGTGGCAGAATTCCTACAGCATCAGAGTGGTGTTGCAGGAGCTAAGGAGGCTCATGATGTGCAAGGAGAACATGAAGCTCCCACAGCCACCAGAGGGCCAGATCTACAGCAACTGATCACCAGCTACAGTTTTTGGTTTTCTCGTTTTTTCGTCTcatctttccccccccccaccccctccttcc

Function

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 variant 1 isoform X3

GO:

id name namespace
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0035370 UBC13-UEV1A complex cellular_component
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008289 True 655 mRNA 0.58 4 50308778 50313435

Neighbor

gene id symbol gene type direction distance location
AMCG00008290 slc52a3 coding downstream 15415 50292332 ~ 50293363 (-)
AMCG00008287 scrt2,LOC103139108,LOC102228875 coding downstream 152913 50147817 ~ 50155865 (-)
AMCG00008286 NA coding downstream 189472 50116033 ~ 50119306 (-)
AMCG00008285 tcf15,LOC106567197,LOC107669611,LOC107594541 coding downstream 219011 50087093 ~ 50089767 (-)
AMCG00008284 LOC105895941,LOC108424612,LOC108255211,LOC103042686,LOC104930306,LOC103375199,LOC101473264 coding downstream 279158 49996960 ~ 50029620 (-)
AMCG00008293 ptpn1,LOC107669644,LOC107751444,LOC107556311,LOC106522952 coding upstream 84304 50397739 ~ 50406216 (-)
AMCG00008295 LOC107738191,LOC107754892,LOC107590469,LOC107558752,LOC106567112 coding upstream 137652 50451087 ~ 50518539 (-)
AMCG00008297 kcng1,LOC102780788,LOC107711602,LOC107558732 coding upstream 236630 50550065 ~ 50559321 (-)
AMCG00008300 nfatc2 coding upstream 478641 50792076 ~ 50798319 (-)
AMCG00008299 NA coding upstream 496944 50810379 ~ 50813806 (-)
G30053 NA non-coding downstream 41343 50267076 ~ 50267435 (-)
G30051 NA non-coding downstream 47591 50260756 ~ 50261187 (-)
G30049 NA non-coding downstream 56856 50251710 ~ 50251922 (-)
G30003 NA non-coding downstream 123501 50185032 ~ 50185277 (-)
G29987 NA non-coding downstream 182647 50125640 ~ 50126131 (-)
G30058 NA non-coding upstream 737 50314172 ~ 50314425 (-)
G30059 NA non-coding upstream 14835 50328270 ~ 50334605 (-)
G30061 NA non-coding upstream 40460 50353895 ~ 50356348 (-)
G30065 NA non-coding upstream 72825 50386260 ~ 50386559 (-)
G30070 NA non-coding upstream 132284 50445719 ~ 50448970 (-)
G30054 NA other downstream 34595 50273738 ~ 50274183 (-)
G29974 LOC101154678 other downstream 254676 50053825 ~ 50054102 (-)
G29928 NA other downstream 403689 49795971 ~ 49905089 (-)
AMCG00008273 gdap1l1,LOC107599436,LOC107664149,LOC107594051,LOC107707014 other downstream 771497 49497400 ~ 49537281 (-)
AMCG00008264 NA other downstream 1055534 49175725 ~ 49253244 (-)
AMCG00008298 NA other upstream 210552 50523987 ~ 50528036 (-)
AMCG00008318 NA other upstream 2015801 52329236 ~ 52339097 (-)
AMCG00008325 znf341,LOC106566899 other upstream 2067621 52381056 ~ 52384567 (-)

Expression


Co-expression Network