AMCG00008291


Basic Information

Item Value
gene id AMCG00008291
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 50358987 ~ 50359865 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008291
ATGGAAGTGGCCGGTTTTTACGAGGGGGATTGCCTTGCTTTCCACGGTAGTAACCGAAGCAACAATCACAGCACCAGAGGCGAAGGCGACTACAAACAGGCGACTGGCGGGTCGATGACGGAGCTGGGCATCGCGGAGCACGAAAAAGCGATCGACTTCAGCATCTACCTCGACCCGGCTTCACACTATCAGCAGCAGCCAACTCAGATCGAAACACTGGACCAGCACCACGGAGGAGATATCTTGGCCAATTTTCTAGCCGAAGAAAGCAAGAACAAACGTGCAGCCACTTTGCAAAACTATAGAAACTACTTTTCATTGAACAACCGGGGTGCCAATCAAACAAACGACAGCCCAAGGCAGTCAGCTATACTGGGCTACCCTGATTTACTGGAGACTCGAGTGGACACGGTGTTTAGTCCGCAACTGCTGGGCGGCTACATCAAGCAGGAGCTAAAAGAAGACTCCAGGATGGACAGGGGCTCTCCTGGTTTCGAGATGCGCTCTTATCTGCAGTACCAGTCCGCTCCGAGCGGCAGCATCGGGAATCTTTCCACCGCCTCCTCTTCCTGCTCTAGTCCACCTGGCACCCCTGCCCCACCAGGTAGCATGGGGTCCCCATCGCACGGCAAAATGTCCTCAGGCAGCAAAGGGAAGAAACGGTTGGAGAAGGACAGCGAGGAATACCGGCTCCGGCGGGAGAGAAACAACGTTGCGGTGAGAAAGAGTAGGGACAAAGCCAAACAGCGGAACATAGAGACTCAGCACAAAGTATTGGAGCTGGCGGCGGAAAATGAACGTTTGCAAAAGCGAGTGGAGCAGCTGTCGAGAGAGCTGGCCACTCTAAGAAACTTGTTGTCGGCTACTGGACAGTGCTAG

Function

GO:

id name namespace
GO:0009617 response to bacterium biological_process
GO:0001878 response to yeast biological_process
GO:0044030 regulation of DNA methylation biological_process

KEGG:

id description
K10048 CEBPB; CCAAT/enhancer binding protein (C/EBP), beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008291 True 879 mRNA 0.54 1 50358987 50359865

Neighbor

gene id symbol gene type direction distance location
AMCG00008283 NA coding upstream 477635 49879979 ~ 49881352 (+)
AMCG00008281 NA coding upstream 762194 49587067 ~ 49596793 (+)
AMCG00008280 jph2,LOC107707015,LOC108275945 coding upstream 798907 49549906 ~ 49560080 (+)
AMCG00008272 NA coding upstream 887372 49469289 ~ 49471615 (+)
AMCG00008262 stk35,LOC105016730,LOC106583621,LOC103372836,LOC104935842 coding upstream 1418892 48923864 ~ 48940095 (+)
AMCG00008292 NA coding downstream 6579 50366444 ~ 50403958 (+)
AMCG00008294 NA coding downstream 91445 50451310 ~ 50460054 (+)
AMCG00008296 NA coding downstream 202889 50562754 ~ 50582183 (+)
AMCG00008304 NA coding downstream 973438 51333303 ~ 51336685 (+)
AMCG00008309 NA coding downstream 1175605 51535470 ~ 51542896 (+)
G30010 ub2v1,LOC105022328,LOC107557526,LOC106572481,LOC108425074 non-coding upstream 47778 50308100 ~ 50311209 (+)
G30017 NA non-coding upstream 84804 50273735 ~ 50274183 (+)
G30016 NA non-coding upstream 91537 50267223 ~ 50267450 (+)
G29991 NA non-coding upstream 202725 50155704 ~ 50156262 (+)
G29990 scrt2,LOC106572483,LOC103139108 non-coding upstream 210264 50147649 ~ 50148723 (+)
G30012 NA non-coding downstream 85992 50445857 ~ 50448965 (+)
G30073 NA non-coding downstream 168668 50528533 ~ 50530747 (+)
G30078 NA non-coding downstream 175909 50535774 ~ 50535987 (+)
G30083 NA non-coding downstream 195519 50555384 ~ 50555589 (+)
G30099 NA non-coding downstream 390515 50750380 ~ 50752307 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other upstream 2583 50322713 ~ 50356404 (+)
AMCG00008279 NA other upstream 500411 49839512 ~ 49858576 (+)
AMCG00008271 NA other upstream 940241 49404856 ~ 49418746 (+)
AMCG00008270 ttpal other upstream 1063628 49288246 ~ 49295359 (+)
AMCG00008263 NA other upstream 1187970 49163816 ~ 49171017 (+)
G30166 NA other downstream 1066716 51426581 ~ 51428055 (+)
G30232 NA other downstream 1740897 52100762 ~ 52101524 (+)
G30299 NA other downstream 2018464 52378329 ~ 52378776 (+)
G30300 NA other downstream 2021476 52381341 ~ 52382418 (+)
AMCG00008334 prex1 other downstream 2631420 52991285 ~ 53087480 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036512 cebpb coding NC_007119.7 CM002892.2 28448267 ~ 28449782 (-)
grasscarp (Ctenopharyngodon idella) CI01000347_00576004_00576843 CEBPB, CEBPA coding CI01000347 null 575394 ~ 577474 (-)